CVS commit: pkgsrc/biology/py-bcbio-gff

["Thomas Klausner" <wiz%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   wiz
Date:           Tue Feb 17 15:54:55 UTC 2026

Modified Files:
        pkgsrc/biology/py-bcbio-gff: distinfo
Added Files:
        pkgsrc/biology/py-bcbio-gff/patches: patch-setup.py

Log Message:
py-bcbio-gff: fix build with setuptools 82


To generate a diff of this commit:
cvs rdiff -u -r1.2 -r1.3 pkgsrc/biology/py-bcbio-gff/distinfo
cvs rdiff -u -r0 -r1.1 pkgsrc/biology/py-bcbio-gff/patches/patch-setup.py

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/biology/py-bcbio-gff/distinfo
diff -u pkgsrc/biology/py-bcbio-gff/distinfo:1.2 pkgsrc/biology/py-bcbio-gff/distinfo:1.3
--- pkgsrc/biology/py-bcbio-gff/distinfo:1.2    Thu Jan 16 13:10:08 2025
+++ pkgsrc/biology/py-bcbio-gff/distinfo        Tue Feb 17 15:54:54 2026
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.2 2025/01/16 13:10:08 bacon Exp $
+$NetBSD: distinfo,v 1.3 2026/02/17 15:54:54 wiz Exp $
 
 BLAKE2s (bcbio-gff-0.7.1.tar.gz) = 917810f9e112e51afd539b9307e1d05b8fa52e6d8dfa1a375a1705430e6a8f4d
 SHA512 (bcbio-gff-0.7.1.tar.gz) = 5cb931835e01a211b2fa9a52f6c5ee6a0a23f48a7a33862eb698110a1dc4f154f417ad626a72cab55f4065889f40349e8f955df6b0190e0377989ffaa182b7b7
 Size (bcbio-gff-0.7.1.tar.gz) = 20102 bytes
+SHA1 (patch-setup.py) = a429675a97eda841adcdf2cd0d1739341f3308dd

Added files:

Index: pkgsrc/biology/py-bcbio-gff/patches/patch-setup.py
diff -u /dev/null pkgsrc/biology/py-bcbio-gff/patches/patch-setup.py:1.1
--- /dev/null   Tue Feb 17 15:54:55 2026
+++ pkgsrc/biology/py-bcbio-gff/patches/patch-setup.py  Tue Feb 17 15:54:54 2026
@@ -0,0 +1,15 @@
+$NetBSD: patch-setup.py,v 1.1 2026/02/17 15:54:54 wiz Exp $
+
+https://github.com/chapmanb/bcbb/issues/148
+
+--- setup.py.orig      2026-02-17 15:52:37.029565857 +0000
++++ setup.py
+@@ -1,8 +1,6 @@
+ #!/usr/bin/env python
+ """Python setup file for Blue Collar Bioinformatics scripts and modules.
+ """
+-from distribute_setup import use_setuptools
+-use_setuptools()
+ from setuptools import setup, find_packages
+ 
+ __version__ = "Undefined"