CVS commit: pkgsrc/math/py-lmfit

["Adam Ciarcinski" <adam%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   adam
Date:           Thu Mar 13 09:01:25 UTC 2025

Modified Files:
        pkgsrc/math/py-lmfit: Makefile distinfo

Log Message:
py-lmfit: updated to 1.3.3

Version 1.3.3

Fixes:

- fix loading spline models with more than five knots
- improved SplineModel to explicitly allow more knots, make it easier to evaluate and save/reload
- improvements to adding Parameters.
- support Model functions with "barestar" syntax
- fix several related problems with providing a Jacobian function, especially for consistency across solvers (including least_squares), and for pickling
- fix Step and Rectangle Models to allow a negative value for sigma, indicating a downward step

Build, Maintenance:

- update issue templates
- add test for consistent init_fit and best_fit for saved/looded SplineModel
- fix NumPy v2 DeprecationWarning
- uppdate SciPy/NumPy dependencies.
- remove numexpr dependency (again)
- drop support for Python 3.8, add Python 3.13
- asteval no longer raises NameError to Python, so we catch exceptions from asteval when creating parameters.
- avoid setting ``stderr`` to ``None`` for uncertainties calculations.

Documentation and Examples:

- add example with uncertainties in both x and y
- make sign of residual calculations in model.py consistent with documentation
- add example fitting multiple datasets using Model interface
- tweaks to 'sphinx-gallery' settings.
- update names of the documentation examples in Gallery


To generate a diff of this commit:
cvs rdiff -u -r1.22 -r1.23 pkgsrc/math/py-lmfit/Makefile
cvs rdiff -u -r1.13 -r1.14 pkgsrc/math/py-lmfit/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/math/py-lmfit/Makefile
diff -u pkgsrc/math/py-lmfit/Makefile:1.22 pkgsrc/math/py-lmfit/Makefile:1.23
--- pkgsrc/math/py-lmfit/Makefile:1.22  Mon Nov 11 07:28:41 2024
+++ pkgsrc/math/py-lmfit/Makefile       Thu Mar 13 09:01:25 2025
@@ -1,6 +1,6 @@
-# $NetBSD: Makefile,v 1.22 2024/11/11 07:28:41 wiz Exp $
+# $NetBSD: Makefile,v 1.23 2025/03/13 09:01:25 adam Exp $
 
-DISTNAME=      lmfit-1.3.2
+DISTNAME=      lmfit-1.3.3
 PKGNAME=       ${PYPKGPREFIX}-${DISTNAME}
 CATEGORIES=    math python
 MASTER_SITES=  ${MASTER_SITE_PYPI:=l/lmfit/}
@@ -14,8 +14,8 @@ TOOL_DEPENDS+=        ${PYPKGPREFIX}-setuptools
 TOOL_DEPENDS+= ${PYPKGPREFIX}-setuptools_scm>=6.2:../../devel/py-setuptools_scm
 DEPENDS+=      ${PYPKGPREFIX}-asteval>=1.0:../../math/py-asteval
 DEPENDS+=      ${PYPKGPREFIX}-dill>=0.3.4:../../textproc/py-dill
-DEPENDS+=      ${PYPKGPREFIX}-numpy>=1.19:../../math/py-numpy
-DEPENDS+=      ${PYPKGPREFIX}-scipy>=1.6:../../math/py-scipy
+DEPENDS+=      ${PYPKGPREFIX}-numpy>=1.24:../../math/py-numpy
+DEPENDS+=      ${PYPKGPREFIX}-scipy>=1.10.0:../../math/py-scipy
 DEPENDS+=      ${PYPKGPREFIX}-uncertainties>=3.2.2:../../math/py-uncertainties
 
 USE_LANGUAGES= # none

Index: pkgsrc/math/py-lmfit/distinfo
diff -u pkgsrc/math/py-lmfit/distinfo:1.13 pkgsrc/math/py-lmfit/distinfo:1.14
--- pkgsrc/math/py-lmfit/distinfo:1.13  Fri Aug  2 07:39:27 2024
+++ pkgsrc/math/py-lmfit/distinfo       Thu Mar 13 09:01:25 2025
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.13 2024/08/02 07:39:27 adam Exp $
+$NetBSD: distinfo,v 1.14 2025/03/13 09:01:25 adam Exp $
 
-BLAKE2s (lmfit-1.3.2.tar.gz) = 4b693c220ecfa9f8a1d3f963684d6e4bc826d7acc699ca483c8409b97aeaa390
-SHA512 (lmfit-1.3.2.tar.gz) = 2dbba258aa14bd9bdb032cfe93086e207da5398137a06031aa1f09a0f9c35636e89488ed1bd348cdc2a5ea140df839f5cb414d9d208ac7ddda5f7f11d0c058d4
-Size (lmfit-1.3.2.tar.gz) = 623945 bytes
+BLAKE2s (lmfit-1.3.3.tar.gz) = 8e388a71f91d063095ea7decd683b4113f60e0e766c04f1b28a794ac2af12657
+SHA512 (lmfit-1.3.3.tar.gz) = d81f950b3f4f4f25f3e814e063925f6f92d3ff1b05ee23bf0d89fd23be993ed34122b8db2b1376481cbe93243facb1de9437268c2bb99c97d9421af5b8443de7
+Size (lmfit-1.3.3.tar.gz) = 632645 bytes