CVS commit: pkgsrc/math/R-lme4

["Makoto Fujiwara" <mef%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   mef
Date:           Sat Feb 15 04:29:47 UTC 2025

Modified Files:
        pkgsrc/math/R-lme4: Makefile distinfo

Log Message:
(math/R-lme4) Updated 1.1.35.5 to 1.1.36

(R CMD Rd2txt  /tmp/math/R-lme4/work/lme4/inst/NEWS.Rd | head -30)
lme4 News

CHANGES IN VERSION 1.1-36:

  NEW FEATURES:

          The full (joint) conditional covariance matrix of fixed
           effects and conditional modes is now available via
           vcov(fitted_model, full = TRUE)

          Random effects formulas are now processed by code from the
           reformulas package, meaning that some extended random
           effects formulas (such as (1|f*g) for crossed random
           effects) will now work

  USER-VISIBLE CHANGES:

          simulate with newparams no longer prints a message
           if the individual parameter vectors are unnamed

  BUG FIXES:

          floating-point errors leading to slightly negative deviances
           could lead to NaN deviance residuals (Wolfgang Viechtbauer,
           GH #812)


To generate a diff of this commit:
cvs rdiff -u -r1.11 -r1.12 pkgsrc/math/R-lme4/Makefile
cvs rdiff -u -r1.10 -r1.11 pkgsrc/math/R-lme4/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/math/R-lme4/Makefile
diff -u pkgsrc/math/R-lme4/Makefile:1.11 pkgsrc/math/R-lme4/Makefile:1.12
--- pkgsrc/math/R-lme4/Makefile:1.11    Mon Nov  4 00:37:07 2024
+++ pkgsrc/math/R-lme4/Makefile Sat Feb 15 04:29:47 2025
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.11 2024/11/04 00:37:07 mef Exp $
+# $NetBSD: Makefile,v 1.12 2025/02/15 04:29:47 mef Exp $
 
 R_PKGNAME=     lme4
-R_PKGVER=      1.1-35.5
+R_PKGVER=      1.1-36
 
 MAINTAINER=    pkgsrc-users%NetBSD.org@localhost
 COMMENT=       Linear mixed-effects models using Eigen and S4
@@ -9,6 +9,7 @@ LICENSE=        gnu-gpl-v2 OR gnu-gpl-v3
 
 DEPENDS+=      R-minqa>=1.1.15:../../math/R-minqa
 DEPENDS+=      R-nloptr>=1.0.4:../../math/R-nloptr
+DEPENDS+=      R-reformulas-[0-9]*:../../math/R-reformulas
 
 # Packages suggested but not available:
 #  'MEMSS', 'mlmRev', 'optimx', 'gamm4', 'HSAUR3', 'dfoptim', 'rr2',

Index: pkgsrc/math/R-lme4/distinfo
diff -u pkgsrc/math/R-lme4/distinfo:1.10 pkgsrc/math/R-lme4/distinfo:1.11
--- pkgsrc/math/R-lme4/distinfo:1.10    Mon Nov  4 00:37:07 2024
+++ pkgsrc/math/R-lme4/distinfo Sat Feb 15 04:29:47 2025
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.10 2024/11/04 00:37:07 mef Exp $
+$NetBSD: distinfo,v 1.11 2025/02/15 04:29:47 mef Exp $
 
-BLAKE2s (R/lme4_1.1-35.5.tar.gz) = 24de84857af534e449cdf288baf0292663232b1dfa2f54ba45d5c159f2673302
-SHA512 (R/lme4_1.1-35.5.tar.gz) = accd5daadde914b93f4480983617202445859fc58fca52b23e59c90d881dcf9c70e6390cc4072353e714543c4ae42e7175f6a7cbbbe39d125e30e55456f46fe6
-Size (R/lme4_1.1-35.5.tar.gz) = 3300116 bytes
+BLAKE2s (R/lme4_1.1-36.tar.gz) = 8199e27c9e2265e9b802b3d786ed95a30f1ff1d0f98a19701448b7f9a92b703b
+SHA512 (R/lme4_1.1-36.tar.gz) = 7d9b6b9fca73b920a77c523bd1efaf0aca2dc7934e50e51053444f56556ac8cca0178d660affab5f1831ae22438ded2dbb49fe80812946ed8d42635ed0c3a88e
+Size (R/lme4_1.1-36.tar.gz) = 3294834 bytes