CVS commit: pkgsrc/biology/peak-classifier

["Jason Bacon" <bacon%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   bacon
Date:           Fri Nov 29 15:17:46 UTC 2024

Modified Files:
        pkgsrc/biology/peak-classifier: Makefile PLIST distinfo

Log Message:
biology/peak-classifier: Update to 0.1.4.21

Fix build for non-default PKGMANDIR
Add --version flag


To generate a diff of this commit:
cvs rdiff -u -r1.13 -r1.14 pkgsrc/biology/peak-classifier/Makefile
cvs rdiff -u -r1.10 -r1.11 pkgsrc/biology/peak-classifier/PLIST
cvs rdiff -u -r1.12 -r1.13 pkgsrc/biology/peak-classifier/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/biology/peak-classifier/Makefile
diff -u pkgsrc/biology/peak-classifier/Makefile:1.13 pkgsrc/biology/peak-classifier/Makefile:1.14
--- pkgsrc/biology/peak-classifier/Makefile:1.13        Sat Oct 28 20:37:17 2023
+++ pkgsrc/biology/peak-classifier/Makefile     Fri Nov 29 15:17:46 2024
@@ -1,9 +1,9 @@
-# $NetBSD: Makefile,v 1.13 2023/10/28 20:37:17 bacon Exp $
+# $NetBSD: Makefile,v 1.14 2024/11/29 15:17:46 bacon Exp $
 
-DISTNAME=      peak-classifier-0.1.4.13
+DISTNAME=      peak-classifier-0.1.4.21
 CATEGORIES=    biology
 MASTER_SITES=  ${MASTER_SITE_GITHUB:=auerlab/}
-GITHUB_TAG=    fb89af3b2e976c2ccb42d861324aa40591f5cadb
+GITHUB_TAG=    95377771d1d26a6f47a5eddbb61ef2e50fae475b
 
 OWNER=         bacon%NetBSD.org@localhost
 HOMEPAGE=      https://github.com/auerlab/peak-classifier
@@ -14,8 +14,7 @@ DEPENDS+=     bedtools>=0:../../biology/bedt
 
 REPLACE_PYTHON=        feature-view.py
 
-pre-build:
-       cd ${WRKSRC} && make depend PREFIX=${PREFIX}
+MAKE_ENV+=     MANDIR=${PREFIX}/${PKGMANDIR} VERSION=${PKGVERSION}
 
 .include "../../biology/biolibc/buildlink3.mk"
 .include "../../lang/python/application.mk"

Index: pkgsrc/biology/peak-classifier/PLIST
diff -u pkgsrc/biology/peak-classifier/PLIST:1.10 pkgsrc/biology/peak-classifier/PLIST:1.11
--- pkgsrc/biology/peak-classifier/PLIST:1.10   Sat Oct 28 20:37:17 2023
+++ pkgsrc/biology/peak-classifier/PLIST        Fri Nov 29 15:17:46 2024
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.10 2023/10/28 20:37:17 bacon Exp $
+@comment $NetBSD: PLIST,v 1.11 2024/11/29 15:17:46 bacon Exp $
 bin/extract-genes
 bin/feature-view
 bin/filter-overlaps

Index: pkgsrc/biology/peak-classifier/distinfo
diff -u pkgsrc/biology/peak-classifier/distinfo:1.12 pkgsrc/biology/peak-classifier/distinfo:1.13
--- pkgsrc/biology/peak-classifier/distinfo:1.12        Sat Oct 28 20:37:17 2023
+++ pkgsrc/biology/peak-classifier/distinfo     Fri Nov 29 15:17:46 2024
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.12 2023/10/28 20:37:17 bacon Exp $
+$NetBSD: distinfo,v 1.13 2024/11/29 15:17:46 bacon Exp $
 
-BLAKE2s (peak-classifier-0.1.4.13-fb89af3b2e976c2ccb42d861324aa40591f5cadb.tar.gz) = 6f7f1bd00518dc39ecfa8fa0ab0c34436174c1366bec6e15708e255627c0dede
-SHA512 (peak-classifier-0.1.4.13-fb89af3b2e976c2ccb42d861324aa40591f5cadb.tar.gz) = 
9463b291b402613bed6a1bf4bda7d0a5508c95093eb48a5c336e42161745f66684ee86d7486f9f55505ef99faf48c1de567396e7f1e8869a587d3a96770f12d7
-Size (peak-classifier-0.1.4.13-fb89af3b2e976c2ccb42d861324aa40591f5cadb.tar.gz) = 87434 bytes
+BLAKE2s (peak-classifier-0.1.4.21-95377771d1d26a6f47a5eddbb61ef2e50fae475b.tar.gz) = 72bb5c66a5e8e957f5f0da00e7914c27119d6af498800270a6d5b065570370e6
+SHA512 (peak-classifier-0.1.4.21-95377771d1d26a6f47a5eddbb61ef2e50fae475b.tar.gz) = 
28d576bf9801f0ba2fcfc5553d5c60f33d774e08fb80b78c65f370ea7e2f96062606124f7014f6434e6a7f1fd5a7532b83b4bf9580c6fffa16a1c84610098e66
+Size (peak-classifier-0.1.4.21-95377771d1d26a6f47a5eddbb61ef2e50fae475b.tar.gz) = 87473 bytes