CVS commit: pkgsrc/biology/ad2vcf

["Jason Bacon" <bacon%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   bacon
Date:           Fri Nov 29 12:54:12 UTC 2024

Modified Files:
        pkgsrc/biology/ad2vcf: Makefile PLIST distinfo

Log Message:
biology/ad2vcf: Update to 0.1.6.20

Rerun make depend upstream to drop system headers
Unbreak build with non-default MANDIR


To generate a diff of this commit:
cvs rdiff -u -r1.8 -r1.9 pkgsrc/biology/ad2vcf/Makefile
cvs rdiff -u -r1.7 -r1.8 pkgsrc/biology/ad2vcf/PLIST
cvs rdiff -u -r1.9 -r1.10 pkgsrc/biology/ad2vcf/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/biology/ad2vcf/Makefile
diff -u pkgsrc/biology/ad2vcf/Makefile:1.8 pkgsrc/biology/ad2vcf/Makefile:1.9
--- pkgsrc/biology/ad2vcf/Makefile:1.8  Sun May 19 12:56:54 2024
+++ pkgsrc/biology/ad2vcf/Makefile      Fri Nov 29 12:54:12 2024
@@ -1,19 +1,16 @@
-# $NetBSD: Makefile,v 1.8 2024/05/19 12:56:54 bacon Exp $
+# $NetBSD: Makefile,v 1.9 2024/11/29 12:54:12 bacon Exp $
 
-DISTNAME=      ad2vcf-0.1.6.19
+DISTNAME=      ad2vcf-0.1.6.20
 CATEGORIES=    biology
 MASTER_SITES=  ${MASTER_SITE_GITHUB:=auerlab/}
-GITHUB_TAG=    f42ae919986d35de2ed6868c22712519d1d0f067
+GITHUB_TAG=    51c419e6c5b55e3973f1a9229dc5a95a4f1a8919
 
 OWNER=         bacon%NetBSD.org@localhost
 HOMEPAGE=      https://github.com/auerlab/ad2vcf
 COMMENT=       Add allelic depth info from a SAM stream to a VCF file
 LICENSE=       2-clause-bsd
 
-MAKE_ENV+=     VERSION=${PKGVERSION}
-
-pre-build:
-       cd ${WRKSRC} && ${MAKE} PREFIX=${PREFIX} depend
+MAKE_ENV+=     VERSION=${PKGVERSION} MANDIR=${PREFIX}/${PKGMANDIR}
 
 do-test:
        cd ${WRKSRC}/Test && ./run-test.sh

Index: pkgsrc/biology/ad2vcf/PLIST
diff -u pkgsrc/biology/ad2vcf/PLIST:1.7 pkgsrc/biology/ad2vcf/PLIST:1.8
--- pkgsrc/biology/ad2vcf/PLIST:1.7     Sun May 19 12:56:54 2024
+++ pkgsrc/biology/ad2vcf/PLIST Fri Nov 29 12:54:12 2024
@@ -1,3 +1,3 @@
-@comment $NetBSD: PLIST,v 1.7 2024/05/19 12:56:54 bacon Exp $
+@comment $NetBSD: PLIST,v 1.8 2024/11/29 12:54:12 bacon Exp $
 bin/ad2vcf
 man/man1/ad2vcf.1

Index: pkgsrc/biology/ad2vcf/distinfo
diff -u pkgsrc/biology/ad2vcf/distinfo:1.9 pkgsrc/biology/ad2vcf/distinfo:1.10
--- pkgsrc/biology/ad2vcf/distinfo:1.9  Sun May 19 12:56:54 2024
+++ pkgsrc/biology/ad2vcf/distinfo      Fri Nov 29 12:54:12 2024
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.9 2024/05/19 12:56:54 bacon Exp $
+$NetBSD: distinfo,v 1.10 2024/11/29 12:54:12 bacon Exp $
 
-BLAKE2s (ad2vcf-0.1.6.19-f42ae919986d35de2ed6868c22712519d1d0f067.tar.gz) = 289fc86cf8b0b516fd82e3becab08919b48c218e41ed7f2065263f5846864cdd
-SHA512 (ad2vcf-0.1.6.19-f42ae919986d35de2ed6868c22712519d1d0f067.tar.gz) = 
0732ce69ffee689088bd7f3f7ca0bd7c909393021d37a81e69bf3884b1c3ab197d96eaf9aadebb59cc8a93bf6d9376a32c5e023fd06fd9867be0b3fa3248ef67
-Size (ad2vcf-0.1.6.19-f42ae919986d35de2ed6868c22712519d1d0f067.tar.gz) = 16179 bytes
+BLAKE2s (ad2vcf-0.1.6.20-51c419e6c5b55e3973f1a9229dc5a95a4f1a8919.tar.gz) = 075ddc6a2c0df84ceb4caedbe164cc8b5a5a4e30e72a4c41c9f737344abed32a
+SHA512 (ad2vcf-0.1.6.20-51c419e6c5b55e3973f1a9229dc5a95a4f1a8919.tar.gz) = 
74a37a3bceebd1bba9d52ed6ac725520884bb9e1693bda86d931f6317872adcf8948784cfa9950b655859e60875154b3f3ac13dfa6e586dbc7e42b0f6ef5639c
+Size (ad2vcf-0.1.6.20-51c419e6c5b55e3973f1a9229dc5a95a4f1a8919.tar.gz) = 16127 bytes