CVS commit: pkgsrc/geography/R-sf

["Makoto Fujiwara" <mef%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   mef
Date:           Wed Nov 27 23:26:16 UTC 2024

Modified Files:
        pkgsrc/geography/R-sf: Makefile distinfo

Log Message:
(geography/R-sf) 1.0.13 to 1.0.19

# version 1.0-19

* fix type checks in C++ GDAL area and length computation functions,
  anticipating GDAL 3.10.0; #2466, #2468, #2469 by @rsbivand and
  @rouault

* improve test on empty geometries, which changed in 1.0-18; #2463

* `gdal_utils()` `ogrinfo` has an argument `read_only` which, when
  `TRUE` (or `options` includes `"-ro"`), opens a datasource in
  read-only mode (#2460; `sf` did this before 1.0-17); by default a
  datasource is opened in update (read-write) mode (since sf 1.0-17;
  #2420)

* the `sf` -> `ppp` conversion `as.ppp.sf()` accepts a data.frame of
  marks instead of just 1 column #2450, by @agila5

* add flag for preservation of point order in `st_voronoi` #1371 for
  GEOS >= 3.12

# version 1.0-18

* support `POLYGON FULL` simple feature geometry, representing the
  entire Earth surface, as used by `s2geometry`; see also
  https://r-spatial.org/r/2024/10/11/polygonfull.html for a longer
  introduction; #2441

* `st_sfc()` has an argument `oriented` which, when set to `TRUE`,
  adds an attribute `oriented=TRUE` to an `sfc` object, indicating
  that this object should not be reoriented in conversion to
  `s2_geography` (avoiding using the global option `s2_oriented`);
  `st_as_sfc.bbox()` sets this to `TRUE`; #2441

* fix build failure with GDAL < 3.4.0 #2436

* `st_simplify()` now accepts feature-wise tolerance values when `s2`
  is switched on #2442

# version 1.0-17

* add `st_transform()` method for `bbox` objects; this uses
  OGRCoordinateTransformation::TransformBounds(), densifying first and
  antemeridian proof; #2415

* `st_filter.sf()` correctly scopes `x` and `y` arguments using !!
  operator; #2416

* `[.sfc` and `[<-.sfc` use matrix/array type subsetting for `sfc`
  objects that have a `dim` attribute

* add `st_exterior_ring()` to extract exterior rings (remove holes);
  #2406

* add `text.sf()`, `text.sfc()`, `points.sf()`, `points.sfc()` to
  annotate base plots at geometry centroids; #2399

* `st_sf()` no longer strips `tbl` or `tbl_df` class labels; #2378

* `st_layers()` returns an object of class `c("sf_layers",
  "data.frame")`, with a dedicated `print` method.

* when `dim` is not `XYZM`, `sf_as_sf.data.frame()` interprets a
  length 4 `coords` argument to specify the corners of a rectangular
  polygon; #2357

* `st_interpolate_aw()` gains an `na.rm` argument, for removing
  features with `NA` attributes before interpolating; #830

* `merge.sf()` no longer renames geometry column; #2334

# version 1.0-16

* `st_join()` no longer renames the geometry column; #2327

* `st_sample()` works when unprojected polygon geometry crosses the
  antemeridian; #2331

* clean up and modernization of S3 registration of methods and tests;
  #2285, #2288, #2316, #2341, #2342, by @olivroy

* `[.sfc` works when setting argument `op`; #2320

* `st_sample()` for polygons is sensitive to setting `oriented = TRUE`
  to prevent wrongly correcting ring directions; #2308

* add support for the GDAL `footprint` utility (requiring GDAL >=
  3.8.0) to `gdal_utils`; #2305, by @goergen95

* existing environment variables `PROJ_LIB` and `PROJ_DATA` are
  (again) ignored on `sf` binary CRAN installations (win + macos),
  effectively by overwriting them during the R session and restoring
  them on exit; this does not happen if environment variable
  `R_SF_USE_PROJ_DATA` is set to `true`. #2298

* add `st_line_project()` to find how far a point is when projected on
  a line; #2291

* add `st_line_interpolate()` to obtain a point at a certain distance
  along a line; #2291

# version 1.0-15

* add `st_perimeter()` generic to cover both geographic and projected
  coordinates; #268, #2279, by @JosiahParry

* add `st_sample()` method for `bbox`, with special provisions for
  ellipsoidal coordinates; #2283

* documentation clean-up by @olivroy; #2266, #2285

* `st_convex_hull()` uses `s2::s2_convex_hull()` for geodetic
  coordinates; #2250

* add `directed` argument to `st_line_merge()`; #2264

* `st_union.sfc()` given `x` and `y` works consistently across
  geodetic and projected objects; #2262

* `st_union.sf()` given `x` and `y` unions pairwise if `by_feature = TRUE`; #2259

* `st_read()` work around issue with GPKG driver if `wkt_filter` is set; #2248

* `st_read()` uses GDAL's stream reading when `use_stream = TRUE`;
  #2238 by @paleolimbot

* `st_transform()` responds to in-session changes to `sf_proj_network()`; #2166

* `plot.sf()`: `key.width` is sensitive to pointsize graphics
  parameter `par("ps")`; keys with factor levels suggest a proper size
  if they won't fit.

* `plot.sf()`: `key.pos` can hold a second value in [0, 1] determining
  the relative position of the key in the available space

* `[<-.sf` fixes the `agr` attribute when it is broken; #2211

* if the env. variable `ADD_SF_NAMESPACE` is set to `true`, `sf`
  objects get a new attribute, `.sf_namespace`, which forces loading
  the `sf` namespace when it has not been loaded so far, e.g. for
  proper printing or plotting of an `sf` object; #2212 by Mike Mahoney

* `distinct.sf()` is type-safe for `sf` objects with zero rows; #2204

* `summarise.sf()` raises an error if `.by` is given but no `across()`
  on the geometry; #2207

* `st_write()` matches fields on name first, than on position; this
  matters for formats that have pre-defined names, such as GPX; #2202

# version 1.0-14

* fix `plot.sf()` when using a key for multiple factor variables; #2196, #2195

* fix use of `as.numeric_version` in a test, for upcoming change in r-devel

* code tidy-ing: fix many lintr suggestions, thanks to Michael Chirico
  (#2181 - #2191)


To generate a diff of this commit:
cvs rdiff -u -r1.31 -r1.32 pkgsrc/geography/R-sf/Makefile
cvs rdiff -u -r1.6 -r1.7 pkgsrc/geography/R-sf/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/geography/R-sf/Makefile
diff -u pkgsrc/geography/R-sf/Makefile:1.31 pkgsrc/geography/R-sf/Makefile:1.32
--- pkgsrc/geography/R-sf/Makefile:1.31 Thu Nov 14 22:20:00 2024
+++ pkgsrc/geography/R-sf/Makefile      Wed Nov 27 23:26:16 2024
@@ -1,15 +1,15 @@
-# $NetBSD: Makefile,v 1.31 2024/11/14 22:20:00 wiz Exp $
+# $NetBSD: Makefile,v 1.32 2024/11/27 23:26:16 mef Exp $
 
 R_PKGNAME=     sf
-R_PKGVER=      1.0-13
-PKGREVISION=   12
+R_PKGVER=      1.0-19
 CATEGORIES=    geography
 
 MAINTAINER=    pkgsrc-users%NetBSD.org@localhost
 COMMENT=       Simple Features for R
 LICENSE=       mit OR gnu-gpl-v2
 
-USE_LANGUAGES+=        c c++11
+USE_LANGUAGES+=                c
+USE_CXX_FEATURES+=     c++11
 
 DEPENDS+=      R-magrittr>=1.5:../../devel/R-magrittr
 DEPENDS+=      R-rgeos>=0.5.2:../../geography/R-rgeos
@@ -19,21 +19,29 @@ DEPENDS+=   R-units>=0.6.0:../../math/R-un
 DEPENDS+=      R-s2-[0-9]*:../../geography/R-s2
 
 # Packages suggested but not available:
-#   'mapview', 'odbc', 'pool', 'RPostgres', 'RSQLite', 'spatstat.geom',
-#   'spatstat.core', 'spatstat.linnet', 'terra', 'tmap'
+#  'nanoarrow', 'mapview', 'odbc', 'pbapply', 'pool', 'RPostgres',
+#  'tmap'
 
+# Packages required and available but unsuitable versions:
+#   's2', 'lwgeom', 'wk'
+
+TEST_DEPENDS+= R-RPostgreSQL-[0-9]*:../../math/R-RPostgreSQL
+TEST_DEPENDS+= R-RSQLite-[0-9]*:../../databases/R-RSQLite
 TEST_DEPENDS+= R-blob-[0-9]*:../../devel/R-blob
 TEST_DEPENDS+= R-covr-[0-9]*:../../devel/R-covr
-TEST_DEPENDS+= R-knitr-[0-9]*:../../print/R-knitr
-TEST_DEPENDS+= R-rmarkdown-[0-9]*:../../textproc/R-rmarkdown
 TEST_DEPENDS+= R-ggplot2-[0-9]*:../../graphics/R-ggplot2
+TEST_DEPENDS+= R-knitr-[0-9]*:../../print/R-knitr
+TEST_DEPENDS+= R-maps-[0-9]*:../../geography/R-maps
 TEST_DEPENDS+= R-microbenchmark-[0-9]*:../../benchmarks/R-microbenchmark
-TEST_DEPENDS+= R-RPostgreSQL-[0-9]*:../../math/R-RPostgreSQL
 TEST_DEPENDS+= R-raster-[0-9]*:../../geography/R-raster
 TEST_DEPENDS+= R-rgdal-[0-9]*:../../geography/R-rgdal
+TEST_DEPENDS+= R-rmarkdown-[0-9]*:../../textproc/R-rmarkdown
 TEST_DEPENDS+= R-stars-[0-9]*:../../geography/R-stars
 TEST_DEPENDS+= R-spatstat-[0-9]*:../../geography/R-spatstat
+TEST_DEPENDS+= R-terra-[0-9]*:../../geography/R-terra
+TEST_DEPENDS+= R-testthat-[0-9]*:../../devel/R-testthat
 TEST_DEPENDS+= R-tidyr-[0-9]*:../../math/R-tidyr
+TEST_DEPENDS+= R-wk-[0-9]*:../../geography/R-wk
 
 .include "../../math/R/Makefile.extension"
 .include "../../devel/R-Rcpp/buildlink3.mk"

Index: pkgsrc/geography/R-sf/distinfo
diff -u pkgsrc/geography/R-sf/distinfo:1.6 pkgsrc/geography/R-sf/distinfo:1.7
--- pkgsrc/geography/R-sf/distinfo:1.6  Mon Jun  5 23:03:07 2023
+++ pkgsrc/geography/R-sf/distinfo      Wed Nov 27 23:26:16 2024
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.6 2023/06/05 23:03:07 mef Exp $
+$NetBSD: distinfo,v 1.7 2024/11/27 23:26:16 mef Exp $
 
-BLAKE2s (R/sf_1.0-13.tar.gz) = 90f3a1f0401a49f19efb4e8a49d6212a94d0ad32447f4ce4f83dfc53f015d626
-SHA512 (R/sf_1.0-13.tar.gz) = 4df61d284baefd6ae0fb1d34b0c6bfd26e9f891aa9f8a4548d0c4092c2da8850af96408b9886d7929b0b43b64582d7bb2ad1611d314a1fcee08319843b9c1f16
-Size (R/sf_1.0-13.tar.gz) = 3488093 bytes
+BLAKE2s (R/sf_1.0-19.tar.gz) = 26326776cbf317cb0e6e76c217d109ebe3f268b40c7820d44a8756d34f455770
+SHA512 (R/sf_1.0-19.tar.gz) = 76f9d9341e78677281c21cd1641ea0d90dd9cfed446372e8bd3b99f52de4f2ca0172f40462875ed276ad52c4d8e734658e38991d04a7702359202d3c9dcb33cd
+Size (R/sf_1.0-19.tar.gz) = 3808024 bytes