CVS commit: pkgsrc/biology/vsearch

["Jason Bacon" <bacon%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   bacon
Date:           Sun Jul  9 16:20:58 UTC 2023

Modified Files:
        pkgsrc/biology/vsearch: Makefile PLIST distinfo
Removed Files:
        pkgsrc/biology/vsearch: patch-src_Makefile.am
        pkgsrc/biology/vsearch/patches: patch-configure.ac
            patch-src_Makefile.am

Log Message:
biology/vsearch: Update to 2.23.0

Numerous minor fixes and enhancements
Changes: https://github.com/torognes/vsearch/releases


To generate a diff of this commit:
cvs rdiff -u -r1.4 -r1.5 pkgsrc/biology/vsearch/Makefile
cvs rdiff -u -r1.3 -r1.4 pkgsrc/biology/vsearch/PLIST
cvs rdiff -u -r1.6 -r1.7 pkgsrc/biology/vsearch/distinfo
cvs rdiff -u -r1.1 -r0 pkgsrc/biology/vsearch/patch-src_Makefile.am
cvs rdiff -u -r1.3 -r0 pkgsrc/biology/vsearch/patches/patch-configure.ac \
    pkgsrc/biology/vsearch/patches/patch-src_Makefile.am

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/biology/vsearch/Makefile
diff -u pkgsrc/biology/vsearch/Makefile:1.4 pkgsrc/biology/vsearch/Makefile:1.5
--- pkgsrc/biology/vsearch/Makefile:1.4 Fri Dec 17 19:20:44 2021
+++ pkgsrc/biology/vsearch/Makefile     Sun Jul  9 16:20:58 2023
@@ -1,6 +1,6 @@
-# $NetBSD: Makefile,v 1.4 2021/12/17 19:20:44 bacon Exp $
+# $NetBSD: Makefile,v 1.5 2023/07/09 16:20:58 bacon Exp $
 
-DISTNAME=      vsearch-2.18.0
+DISTNAME=      vsearch-2.23.0
 CATEGORIES=    biology
 MASTER_SITES=  ${MASTER_SITE_GITHUB:=torognes/}
 GITHUB_TAG=    v${PKGVERSION_NOREV}
@@ -18,8 +18,6 @@ USE_TOOLS+=           autoconf automake autorecon
 GNU_CONFIGURE=         yes
 CONFIGURE_ARGS+=       --disable-pdfman
 
-CXXFLAGS+=     -std=c++11
-
 pre-configure:
        cd ${WRKSRC} && autoreconf -fi
 

Index: pkgsrc/biology/vsearch/PLIST
diff -u pkgsrc/biology/vsearch/PLIST:1.3 pkgsrc/biology/vsearch/PLIST:1.4
--- pkgsrc/biology/vsearch/PLIST:1.3    Fri Dec 17 19:20:44 2021
+++ pkgsrc/biology/vsearch/PLIST        Sun Jul  9 16:20:58 2023
@@ -1,3 +1,3 @@
-@comment $NetBSD: PLIST,v 1.3 2021/12/17 19:20:44 bacon Exp $
+@comment $NetBSD: PLIST,v 1.4 2023/07/09 16:20:58 bacon Exp $
 bin/vsearch
 man/man1/vsearch.1

Index: pkgsrc/biology/vsearch/distinfo
diff -u pkgsrc/biology/vsearch/distinfo:1.6 pkgsrc/biology/vsearch/distinfo:1.7
--- pkgsrc/biology/vsearch/distinfo:1.6 Fri Dec 17 19:20:44 2021
+++ pkgsrc/biology/vsearch/distinfo     Sun Jul  9 16:20:58 2023
@@ -1,7 +1,5 @@
-$NetBSD: distinfo,v 1.6 2021/12/17 19:20:44 bacon Exp $
+$NetBSD: distinfo,v 1.7 2023/07/09 16:20:58 bacon Exp $
 
-BLAKE2s (vsearch-2.18.0.tar.gz) = 48ca99858b157da943eca273d4a4f25e94aa7c64ecf4c7373821c30cdfbc38c5
-SHA512 (vsearch-2.18.0.tar.gz) = 9da21685fe64743ccf43f209bdd5b586c8f7faaae9f1a204634b713d7ba8a86478f31b24bdda7820fba97318d4408c803a6b3eed1e37189907fbd5882183d781
-Size (vsearch-2.18.0.tar.gz) = 252014 bytes
-SHA1 (patch-configure.ac) = 23aa28454d5f58222b10302cbd01ceaf0e7dca3f
-SHA1 (patch-src_Makefile.am) = fb76ec48d5292aaa276a0b6105e19ccc0abb03df
+BLAKE2s (vsearch-2.23.0.tar.gz) = fc692c05824caa1eb52187bfd38663cb0a1d67070b8b070ccc4a455e96737b38
+SHA512 (vsearch-2.23.0.tar.gz) = cb3fffaa01d765f9d173cce45c240ef37d49fc59fb1a893e49fe16d29ce3b150f161f9ccd05e6491a6ecc6e0574bb774b4aaccb563dab1dc087b2d713c158a22
+Size (vsearch-2.23.0.tar.gz) = 266534 bytes