CVS commit: pkgsrc/biology/vcf2hap

["Jason Bacon" <bacon%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   bacon
Date:           Wed Mar 24 18:22:53 UTC 2021

Added Files:
        pkgsrc/biology/vcf2hap: DESCR Makefile PLIST distinfo

Log Message:
biology/vcf2hap: import vcf2hap-0.1.2

vcf2hap is a simple tool for generating a .hap file from a VCF. The .hap file
is required by haplohseq.
vcf2hap is extremely fast and requires a trivial amount of memory regardless of
the size of the VCF file.


To generate a diff of this commit:
cvs rdiff -u -r0 -r1.1 pkgsrc/biology/vcf2hap/DESCR \
    pkgsrc/biology/vcf2hap/Makefile pkgsrc/biology/vcf2hap/PLIST \
    pkgsrc/biology/vcf2hap/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Added files:

Index: pkgsrc/biology/vcf2hap/DESCR
diff -u /dev/null pkgsrc/biology/vcf2hap/DESCR:1.1
--- /dev/null   Wed Mar 24 18:22:53 2021
+++ pkgsrc/biology/vcf2hap/DESCR        Wed Mar 24 18:22:53 2021
@@ -0,0 +1,4 @@
+vcf2hap is a simple tool for generating a .hap file from a VCF. The .hap file
+is required by haplohseq.
+vcf2hap is extremely fast and requires a trivial amount of memory regardless of
+the size of the VCF file.
Index: pkgsrc/biology/vcf2hap/Makefile
diff -u /dev/null pkgsrc/biology/vcf2hap/Makefile:1.1
--- /dev/null   Wed Mar 24 18:22:53 2021
+++ pkgsrc/biology/vcf2hap/Makefile     Wed Mar 24 18:22:53 2021
@@ -0,0 +1,19 @@
+# $NetBSD: Makefile,v 1.1 2021/03/24 18:22:53 bacon Exp $
+
+DISTNAME=      vcf2hap-0.1.2
+CATEGORIES=    biology
+MASTER_SITES=  ${MASTER_SITE_GITHUB:=auerlab/}
+
+MAINTAINER=    bacon%NetBSD.org@localhost
+HOMEPAGE=      https://github.com/auerlab/vcf2hap
+COMMENT=       Generate .hap file from VCF for haplohseq
+LICENSE=       2-clause-bsd
+
+pre-build:
+       cd ${WRKSRC} && ${MAKE} PREFIX=${PREFIX} depend
+
+do-test:
+       cd ${WRKSRC}/Test && ./run-test.sh
+
+.include "../../biology/biolibc/buildlink3.mk"
+.include "../../mk/bsd.pkg.mk"
Index: pkgsrc/biology/vcf2hap/PLIST
diff -u /dev/null pkgsrc/biology/vcf2hap/PLIST:1.1
--- /dev/null   Wed Mar 24 18:22:53 2021
+++ pkgsrc/biology/vcf2hap/PLIST        Wed Mar 24 18:22:53 2021
@@ -0,0 +1,3 @@
+@comment $NetBSD: PLIST,v 1.1 2021/03/24 18:22:53 bacon Exp $
+bin/vcf2hap
+man/man1/vcf2hap.1
Index: pkgsrc/biology/vcf2hap/distinfo
diff -u /dev/null pkgsrc/biology/vcf2hap/distinfo:1.1
--- /dev/null   Wed Mar 24 18:22:53 2021
+++ pkgsrc/biology/vcf2hap/distinfo     Wed Mar 24 18:22:53 2021
@@ -0,0 +1,6 @@
+$NetBSD: distinfo,v 1.1 2021/03/24 18:22:53 bacon Exp $
+
+SHA1 (vcf2hap-0.1.2.tar.gz) = a18bc1746ec4df4be88d635c18b0a6b240d2c309
+RMD160 (vcf2hap-0.1.2.tar.gz) = a7ec7f863888e005b84f59db7c2787ec19e960de
+SHA512 (vcf2hap-0.1.2.tar.gz) = 4a4b3c0c63e711f7f9a57706c675bb02f9d55976b6ee3aee1e1d1eeb14f2d92a62ad952e2c03fbe5ab525174b01260b5cb305c9980b48411618bf7e9669ae7f6
+Size (vcf2hap-0.1.2.tar.gz) = 197782 bytes