CVS commit: pkgsrc/biology/py-cutadapt

["Adam Ciarcinski" <adam%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   adam
Date:           Mon Mar  8 07:10:56 UTC 2021

Modified Files:
        pkgsrc/biology/py-cutadapt: Makefile distinfo

Log Message:
py-cutadapt: updated to 3.3

v3.3:
* :issue:`504`: Fix a crash on Windows.
* :issue:`490`: When ``--rename`` is used with ``--revcomp``, disable adding the
  ``rc`` suffix to reads that were reverse-complemented.
* Also, there is now a ``{rc}` template variable for the ``--rename`` option, which
  is replaced with "rc" if the read was reverse-complemented (and the empty string if not).
* :issue:`512`: Fix issue :issue:`128` once more (the “Reads written” figure in the report
  incorrectly included both trimmed and untrimmed reads if ``--untrimmed-output`` was used).
* :issue:`515`: The report is now send to stderr if any output file is
  written to stdout


To generate a diff of this commit:
cvs rdiff -u -r1.2 -r1.3 pkgsrc/biology/py-cutadapt/Makefile
cvs rdiff -u -r1.1 -r1.2 pkgsrc/biology/py-cutadapt/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/biology/py-cutadapt/Makefile
diff -u pkgsrc/biology/py-cutadapt/Makefile:1.2 pkgsrc/biology/py-cutadapt/Makefile:1.3
--- pkgsrc/biology/py-cutadapt/Makefile:1.2     Thu Feb 11 10:30:55 2021
+++ pkgsrc/biology/py-cutadapt/Makefile Mon Mar  8 07:10:56 2021
@@ -1,6 +1,6 @@
-# $NetBSD: Makefile,v 1.2 2021/02/11 10:30:55 adam Exp $
+# $NetBSD: Makefile,v 1.3 2021/03/08 07:10:56 adam Exp $
 
-DISTNAME=      cutadapt-3.2
+DISTNAME=      cutadapt-3.3
 PKGNAME=       ${PYPKGPREFIX}-${DISTNAME}
 CATEGORIES=    biology python
 MASTER_SITES=  ${MASTER_SITE_PYPI:=c/cutadapt/}

Index: pkgsrc/biology/py-cutadapt/distinfo
diff -u pkgsrc/biology/py-cutadapt/distinfo:1.1 pkgsrc/biology/py-cutadapt/distinfo:1.2
--- pkgsrc/biology/py-cutadapt/distinfo:1.1     Mon Feb  8 01:55:23 2021
+++ pkgsrc/biology/py-cutadapt/distinfo Mon Mar  8 07:10:56 2021
@@ -1,6 +1,6 @@
-$NetBSD: distinfo,v 1.1 2021/02/08 01:55:23 bacon Exp $
+$NetBSD: distinfo,v 1.2 2021/03/08 07:10:56 adam Exp $
 
-SHA1 (cutadapt-3.2.tar.gz) = 11b2545862c4e9a655a279f951b15558b1617506
-RMD160 (cutadapt-3.2.tar.gz) = e04f8be21e118c760dc03d80544c1d4f7135f985
-SHA512 (cutadapt-3.2.tar.gz) = 97ab1cadc3bd1585012c0aba916b0031d8b13bff1f1894f4548b6f7bfa20b5f2d598c499664d755a81be57e36fd5c712f36df77cfcd1f2b28a4f27990ee0b56c
-Size (cutadapt-3.2.tar.gz) = 292702 bytes
+SHA1 (cutadapt-3.3.tar.gz) = aab2e1ed047c58cbe354b4ac1a4def1c83bf8f8c
+RMD160 (cutadapt-3.3.tar.gz) = fc7617f33a4d35327af5013b8a7df0df431365a7
+SHA512 (cutadapt-3.3.tar.gz) = d8895453455aff31c613a4e031559c08646ce2bf072d85ed7b195e5863700a02a1ed44bfb409b63849aadf1db7cf40dea33d0ead4f056307365dc91aa6c93234
+Size (cutadapt-3.3.tar.gz) = 294579 bytes