CVS commit: pkgsrc/biology/py-cutadapt

["Jason Bacon" <bacon%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   bacon
Date:           Mon Feb  8 01:55:23 UTC 2021

Added Files:
        pkgsrc/biology/py-cutadapt: DESCR Makefile PLIST distinfo

Log Message:
biology/py-cutadapt: import py38-cutadapt-3.2

Cutadapt finds and removes adapter sequences, primers, poly-A tails and other
types of unwanted sequence from your high-throughput sequencing reads.


To generate a diff of this commit:
cvs rdiff -u -r0 -r1.1 pkgsrc/biology/py-cutadapt/DESCR \
    pkgsrc/biology/py-cutadapt/Makefile pkgsrc/biology/py-cutadapt/PLIST \
    pkgsrc/biology/py-cutadapt/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Added files:

Index: pkgsrc/biology/py-cutadapt/DESCR
diff -u /dev/null pkgsrc/biology/py-cutadapt/DESCR:1.1
--- /dev/null   Mon Feb  8 01:55:23 2021
+++ pkgsrc/biology/py-cutadapt/DESCR    Mon Feb  8 01:55:23 2021
@@ -0,0 +1,2 @@
+Cutadapt finds and removes adapter sequences, primers, poly-A tails and other
+types of unwanted sequence from your high-throughput sequencing reads.
Index: pkgsrc/biology/py-cutadapt/Makefile
diff -u /dev/null pkgsrc/biology/py-cutadapt/Makefile:1.1
--- /dev/null   Mon Feb  8 01:55:23 2021
+++ pkgsrc/biology/py-cutadapt/Makefile Mon Feb  8 01:55:23 2021
@@ -0,0 +1,19 @@
+# $NetBSD: Makefile,v 1.1 2021/02/08 01:55:23 bacon Exp $
+
+DISTNAME=      cutadapt-3.2
+PKGNAME=       ${PYPKGPREFIX}-${DISTNAME}
+CATEGORIES=    biology
+MASTER_SITES=  ${MASTER_SITE_PYPI:=c/cutadapt/}
+
+MAINTAINER=    bacon%NetBSD.org@localhost
+HOMEPAGE=      https://cutadapt.readthedocs.io/en/stable/
+COMMENT=       Find and remove adapter sequences, primers, poly-A tails, etc
+LICENSE=       mit
+
+DEPENDS+=      ${PYPKGPREFIX}-xopen>=1.0.0:../../devel/py-xopen
+DEPENDS+=      ${PYPKGPREFIX}-dnaio>=0.5.0:../../biology/py-dnaio
+
+PYTHON_SELF_CONFLICT=  yes
+
+.include "../../lang/python/egg.mk"
+.include "../../mk/bsd.pkg.mk"
Index: pkgsrc/biology/py-cutadapt/PLIST
diff -u /dev/null pkgsrc/biology/py-cutadapt/PLIST:1.1
--- /dev/null   Mon Feb  8 01:55:23 2021
+++ pkgsrc/biology/py-cutadapt/PLIST    Mon Feb  8 01:55:23 2021
@@ -0,0 +1,49 @@
+@comment $NetBSD: PLIST,v 1.1 2021/02/08 01:55:23 bacon Exp $
+bin/cutadapt
+${PYSITELIB}/${EGG_INFODIR}/PKG-INFO
+${PYSITELIB}/${EGG_INFODIR}/SOURCES.txt
+${PYSITELIB}/${EGG_INFODIR}/dependency_links.txt
+${PYSITELIB}/${EGG_INFODIR}/entry_points.txt
+${PYSITELIB}/${EGG_INFODIR}/requires.txt
+${PYSITELIB}/${EGG_INFODIR}/top_level.txt
+${PYSITELIB}/cutadapt/__init__.py
+${PYSITELIB}/cutadapt/__init__.pyc
+${PYSITELIB}/cutadapt/__init__.pyo
+${PYSITELIB}/cutadapt/__main__.py
+${PYSITELIB}/cutadapt/__main__.pyc
+${PYSITELIB}/cutadapt/__main__.pyo
+${PYSITELIB}/cutadapt/_align.so
+${PYSITELIB}/cutadapt/_version.py
+${PYSITELIB}/cutadapt/_version.pyc
+${PYSITELIB}/cutadapt/_version.pyo
+${PYSITELIB}/cutadapt/adapters.py
+${PYSITELIB}/cutadapt/adapters.pyc
+${PYSITELIB}/cutadapt/adapters.pyo
+${PYSITELIB}/cutadapt/align.py
+${PYSITELIB}/cutadapt/align.pyc
+${PYSITELIB}/cutadapt/align.pyo
+${PYSITELIB}/cutadapt/filters.py
+${PYSITELIB}/cutadapt/filters.pyc
+${PYSITELIB}/cutadapt/filters.pyo
+${PYSITELIB}/cutadapt/log.py
+${PYSITELIB}/cutadapt/log.pyc
+${PYSITELIB}/cutadapt/log.pyo
+${PYSITELIB}/cutadapt/modifiers.py
+${PYSITELIB}/cutadapt/modifiers.pyc
+${PYSITELIB}/cutadapt/modifiers.pyo
+${PYSITELIB}/cutadapt/parser.py
+${PYSITELIB}/cutadapt/parser.pyc
+${PYSITELIB}/cutadapt/parser.pyo
+${PYSITELIB}/cutadapt/pipeline.py
+${PYSITELIB}/cutadapt/pipeline.pyc
+${PYSITELIB}/cutadapt/pipeline.pyo
+${PYSITELIB}/cutadapt/qualtrim.so
+${PYSITELIB}/cutadapt/report.py
+${PYSITELIB}/cutadapt/report.pyc
+${PYSITELIB}/cutadapt/report.pyo
+${PYSITELIB}/cutadapt/tokenizer.py
+${PYSITELIB}/cutadapt/tokenizer.pyc
+${PYSITELIB}/cutadapt/tokenizer.pyo
+${PYSITELIB}/cutadapt/utils.py
+${PYSITELIB}/cutadapt/utils.pyc
+${PYSITELIB}/cutadapt/utils.pyo
Index: pkgsrc/biology/py-cutadapt/distinfo
diff -u /dev/null pkgsrc/biology/py-cutadapt/distinfo:1.1
--- /dev/null   Mon Feb  8 01:55:23 2021
+++ pkgsrc/biology/py-cutadapt/distinfo Mon Feb  8 01:55:23 2021
@@ -0,0 +1,6 @@
+$NetBSD: distinfo,v 1.1 2021/02/08 01:55:23 bacon Exp $
+
+SHA1 (cutadapt-3.2.tar.gz) = 11b2545862c4e9a655a279f951b15558b1617506
+RMD160 (cutadapt-3.2.tar.gz) = e04f8be21e118c760dc03d80544c1d4f7135f985
+SHA512 (cutadapt-3.2.tar.gz) = 97ab1cadc3bd1585012c0aba916b0031d8b13bff1f1894f4548b6f7bfa20b5f2d598c499664d755a81be57e36fd5c712f36df77cfcd1f2b28a4f27990ee0b56c
+Size (cutadapt-3.2.tar.gz) = 292702 bytes