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CVS commit: pkgsrc/biology/gnome-chemistry-utils



Module Name:    pkgsrc
Committed By:   ryoon
Date:           Mon Jun 29 13:04:48 UTC 2020

Modified Files:
        pkgsrc/biology/gnome-chemistry-utils: Makefile PLIST distinfo
Added Files:
        pkgsrc/biology/gnome-chemistry-utils/patches: patch-configure
Removed Files:
        pkgsrc/biology/gnome-chemistry-utils/patches: patch-libs_gccv_text.cc
            patch-libs_gcu_loader-error.h patch-libs_gcu_spectrumdoc.cc
            patch-programs_crystal_document.cc

Log Message:
gnome-chemistry-utils: Update to 0.14.16

Changelog:
Version 0.14.16:
        GChemPaint:
                * Do not show buttons for non yet implemented tools.

Version 0.14.15:
        GCCV library:
                * Don't use the abs() function on unsigned numbers.
        Other:
                * Updated appdata files.

Version 0.14.14:
        Mozilla plugin:
        * Fix build.

Version 0.14.13:
        GChemPaint:
                * Optional use of Lasem to display maths.
                * Fix rendering with gtk+ >= 3.20.
                * Fix crash with atom charges larger than 1.
                * Fix crash when deleting a bond outside a molecule. [#48256]
        Gnumeric plugin:
                * Add monoisotopicmass function in gnumeric and more.
        Databases:
                * Update names for elements 113, 115, 117 and 118.

Version 0.14.12:
        GChemPaint:
                * Enhanced Chemdraw formats support. [sr #108952]
                * Optional use of Lasem to display maths.
                * Fix rendering with gtk+ >= 3.20.
        GChemCalc:
                * Don't crash on "Ac" string. [#47366]

Version 0.14.11:
        GChemPaint:
                * Fix an infinite loop condition in retrosyntheses alignment.
                * Don't crash when importing an invalid string. [Redhat bug #1285154]
                * Fix drawing when zoomed.
                * Fix various runtime errors.
                * Fix crash when creating a reaction with no product.
                * Enhanced Chemdraw formats support.
                * Fix embedding of a whole molecule inside brackets. [#47224]
        GChemTable:
                * Don't crash when showing an already existing chart.
                [Redhat bug #1302135]
        GCrystal:
                * Fix build with gcc-6. [Redhat bug #1307546]
        GCrystal and GChem3D:
                * Don't crash when rendering to memory (images and print). [#47169]
        Other:
                * Added keywords to desktop files.
                * Updated appdata files.

Version 0.14.10:
        GChemPaint:
                * Fix an object bounds issue.
        Mozilla plugin:
                * Supports the npapi-sdk package as requirement.
        Other:
                * Fixed typos in appdata files.

Version 0.14.9:
        GChemPaint:
                * Ensure that the document size is always updated. [#43091]
        3d viewer and GCrystal:
                * Fix rotation. [#42977] (patch from Toni Andjelkovic)
        All applications:
                * Add appdata files.

Version 0.14.8
        GChemPaint:
                * Fix drawing with Gtk+ >= 3.10.

Version 0.14.7
        GCrystal:
                * Fix crash in dialogs with recent Gtk+.
        Mozilla plugin:
                * Fix crashers for 2D and 3D molecules.

Version 0.14.6
        3d viewer:
                * Avoid empty entries in recent list.
        CGchemPaint:
                * Restore .mol files support.
                * Fix CML import (also affected 3d viewer and >GCrystal).
                * Fix BMP export.
        GCrystal:
                * Fix test order in lines code. [#41261]
        GSpectrum:
                * Fix access to uninitialized data.
                * Don' double free a string.
        GOffice component:
                * Don't crash when editing after saving a GChemPaint object.
        Mozilla plugin:
                * Fix supported mime-types list. (see Debian bug #716961)
        Other:
                * Fix build on FreeBSD (Koop Mast). [#41256]

Version 0.14.5
        GChemPaint:
                * Make adding template work again.

Version 0.14.4
        GChemPaint:
                * Do not use a NULL atom properties. [#40194]

Version 0.14.3
        GChemPaint:
                * Really close the window on delete event.
                * Don't crash when aligning ungrouped objects.
        GChemTable:
                * Fix crash when using masses in a graph.
                * Fix graph behavior after edition.
        All:
                * Make sure to not create a C++ locale from a NULL string.

Version 0.14.2
        GChemPaint:
                * Fix crash when loading some molecules (was introduced in 0.14.1).

Version 0.14.1
        GChemPaint:
                * Do not allow a mesomery destruction when inside a reaction.
                * Fix molecule deletion inside a mesomery.
                * Fix reactant deletion inside a reaction.
                * Don't crash when a mesomery inside a reaction is destroyed.
                * Check molecule consistency when loading, avoids a stack overflow.
                * Enhanced representaion of chiral molecules imported from CML and other
                formats.
                * Fix crash when deleting a cyclic bond.
        GCrystal:
                * Fix row selection operations order in grids.

Version 0.14.0
        GChemPaint:
                * Fix reaction construction.
                * Fix non bonding electron pairs.

Version 0.13.99
        GChemPaint:
                * Fix squiggle bonds period.
                * Allow brackets around a mesomery.
                * Allow a mesomery inside a reaction.
                * Fixed some meomory access issues.
                * Fixed crash when loading a group.
                * Fixed mesomery construction.
                * Fixed crash when ungrouping.

Version 0.13.98
        GChemPaint:
                * Don't freeze after an aborted molecules merge.
                * Initialize the bond order for the Newman projection tool.
                * Don't crash when adding brackets around a fragment.
                * Fix undoing a molecule partial flip.
                * Fix bracket stoichiometry index position after a transform.
                * Fix explicit lone pairs count evaluation.

Version 0.13.92
        GChemCalc
                * Updated the documentation.
        GChemPaint:
                * Fix View::BuildSVG() and View::BuildEPS() which were missing the
                trailing 0.
                * Fix misleading error message while saving.
                * Fix loading of arrows inside a group. [#27032]
        GCrystal:
                * Apply element change to all slected atoms.
                * Updated the documentation.
        GSpectrum:
                * Add "Response factor" as supported unit.
                * Fixed widgets spacing.
                * Updated the documentation.
        GChemTable:
                * Updated the documentation.

Version 0.13.91
        3d viewer:
                * Show all menu items when a molecule is loaded from the command line.
                * Updated user documentation.
        GChemPaint:
                * Don't crash on startup.
        All:
                * Fix localization issues.
                * Fixed modal message boxes behavior.

Version 0.13.90
        3d viewer:
                * Fix import from pdb files. [#36582]
        GCrystal:
                * Fix infinite loop condition. [#36583]
                * Fix atomic radius change issue.
        GChemTable:
                * Fix languages translation.

Version 0.13.7
        GChemPaint:
                * Fixed crash when selecting the alignment item inside a mechanism
                step. [#35626]
        GCrystal:
                * Fixed loading CIF files using uptodate space groups descriptions.
        Other:
                * License is now GPL version 3 (except for the OpenBabel related code).
                * Fix build on big endian machines (Dan Horak). [#36175]
                * Updated API documentation.

Version 0.13.6
        GChemPaint:
                * fixed text position serialization. [#34947]
                * add some support for Newman projections.
                * accept some multisteps reactions.
        Goffice component:
                * Add support for 3D molecular structures.
        Other:
                * Fixed pixmaps installation directory. [#35272]
                * fixed build with ->l,--no-undefined. [patch #7677]

Version 0.13.5
        3d viewer:
                * Import from InChI or SMILES.
                * Export to GChemPaint and GChemCalc.
                * Generates InChI, InChiKey and SMILES.
                * Add access to databases.
        GChemPaint:
                * Brackets inside a molecule accept a stoichiometry coefficient.
        GCrystal:
                * Use multiple selection in atoms and lines dialogs.
        GSpectrum:
                * Allow markup in combo boxes and axes titles.
        Goffice component:
                * Add support for crystal structures.
        Other:
                * Fixed one more OpenGL related crasher.

Version 0.13.4
        All:
                * Ported to Gtk+-3.0.
        GCrystal:
                * Use the new GcrGrid item in atoms, lines and cleavages dialogs.
                * Make these and size dialogs instant apply.
        GChemTable:
                * Use a more complete tip window for elements.

Version 0.13.3
        GChemPaint:
                * Fixed build with gcc-4.6. [#32363]
                * Allow colored atomic symbols on a per-document basis.
                * Brackets tool now working, not perfectly though.
        Other:
                * Don't use POLLRDHUP when not defined. [#32768]
                * Split libgcu so that libgcu itself never calls gtk+ directly.

Version 0.13.2
        GChemPaint:
                * Do not allow document changes using keyboard while
                dragging the mouse. [#31812]
                * Don't add new molecules when undoing a mechanism arrow deletion.
                [#32433]
                * Removed the Wikipedia tool which was obsolete.
                * Reorganized molecule contextual menu with new 3D options
                and databases access.
        Other:
                * OpenBabel support has been moved to a separate process and greatly
                enhanced, specially for 3D export from gchempaint.
                * A lot of bugs have been fixed.

Version 0.13.1
        GSpectrum:
                * Loads NUTS files.
                * Transforms FID to spectrum.

Version 0.13.0
        GChemPaint:
                * New "lasso" tool to allow partial selections.
                * New "brackets" tool (doesn't work yet).
        Other:
                * libgcr: new library for GCrystal.
                * Fixed all bugs discovered in the 0.12 banch.


To generate a diff of this commit:
cvs rdiff -u -r1.46 -r1.47 pkgsrc/biology/gnome-chemistry-utils/Makefile
cvs rdiff -u -r1.2 -r1.3 pkgsrc/biology/gnome-chemistry-utils/PLIST
cvs rdiff -u -r1.7 -r1.8 pkgsrc/biology/gnome-chemistry-utils/distinfo
cvs rdiff -u -r0 -r1.1 \
    pkgsrc/biology/gnome-chemistry-utils/patches/patch-configure
cvs rdiff -u -r1.1 -r0 \
    pkgsrc/biology/gnome-chemistry-utils/patches/patch-libs_gccv_text.cc \
    pkgsrc/biology/gnome-chemistry-utils/patches/patch-libs_gcu_loader-error.h \
    pkgsrc/biology/gnome-chemistry-utils/patches/patch-libs_gcu_spectrumdoc.cc \
    pkgsrc/biology/gnome-chemistry-utils/patches/patch-programs_crystal_document.cc

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/biology/gnome-chemistry-utils/Makefile
diff -u pkgsrc/biology/gnome-chemistry-utils/Makefile:1.46 pkgsrc/biology/gnome-chemistry-utils/Makefile:1.47
--- pkgsrc/biology/gnome-chemistry-utils/Makefile:1.46  Tue Jun  2 08:23:16 2020
+++ pkgsrc/biology/gnome-chemistry-utils/Makefile       Mon Jun 29 13:04:48 2020
@@ -1,10 +1,9 @@
-# $NetBSD: Makefile,v 1.46 2020/06/02 08:23:16 adam Exp $
+# $NetBSD: Makefile,v 1.47 2020/06/29 13:04:48 ryoon Exp $
 #
 
-DISTNAME=      gnome-chemistry-utils-0.12.13
-PKGREVISION=   33
+DISTNAME=      gnome-chemistry-utils-0.14.16
 CATEGORIES=    biology
-MASTER_SITES=  http://download-mirror.savannah.gnu.org/releases/gchemutils/0.12/
+MASTER_SITES=  http://download-mirror.savannah.gnu.org/releases/gchemutils/0.14/
 EXTRACT_SUFX=  .tar.bz2
 
 MAINTAINER=    pkgsrc-users%NetBSD.org@localhost
@@ -17,25 +16,19 @@ USE_LIBTOOL=        yes
 USE_TOOLS+=    gmake intltool pkg-config msgfmt xgettext msgmerge perl
 USE_LANGUAGES= c c++
 
-GCONF_SCHEMAS+=        gchemutils.schemas
-GCONF_SCHEMAS+=        gchempaint-arrows.schemas
-GCONF_SCHEMAS+=        gcrystal.schemas
-GCONF_SCHEMAS+=        gchempaint.schemas
-
 BUILDLINK_TRANSFORM+=  rm:-DGTK_DISABLE_DEPRECATED
 BUILDLINK_TRANSFORM+=  rm:-ldl
 
 CONFIGURE_ARGS+=       --disable-update-databases
 
-.include "../../devel/GConf/schemas.mk"
 .include "../../databases/shared-mime-info/buildlink3.mk"
 .include "../../databases/gnome-mime-data/buildlink3.mk"
 .include "../../textproc/gnome-doc-utils/buildlink3.mk"
-.include "../../mk/omf-scrollkeeper.mk"
 .include "../../graphics/gtkglext/buildlink3.mk"
-.include "../../misc/goffice0.8/buildlink3.mk"
+.include "../../misc/goffice0.10/buildlink3.mk"
 .include "../../sysutils/desktop-file-utils/desktopdb.mk"
 .include "../../biology/chemical-mime-data/buildlink3.mk"
 .include "../../biology/bodr/buildlink3.mk"
 .include "../../biology/openbabel/buildlink3.mk"
+.include "../../x11/gtk3/buildlink3.mk"
 .include "../../mk/bsd.pkg.mk"

Index: pkgsrc/biology/gnome-chemistry-utils/PLIST
diff -u pkgsrc/biology/gnome-chemistry-utils/PLIST:1.2 pkgsrc/biology/gnome-chemistry-utils/PLIST:1.3
--- pkgsrc/biology/gnome-chemistry-utils/PLIST:1.2      Tue Jul  3 19:32:10 2012
+++ pkgsrc/biology/gnome-chemistry-utils/PLIST  Mon Jun 29 13:04:48 2020
@@ -1,305 +1,306 @@
-@comment $NetBSD: PLIST,v 1.2 2012/07/03 19:32:10 ryoon Exp $
+@comment $NetBSD: PLIST,v 1.3 2020/06/29 13:04:48 ryoon Exp $
 bin/gchem3d
-bin/gchem3d-0.12
+bin/gchem3d-0.14
 bin/gchemcalc
-bin/gchemcalc-0.12
+bin/gchemcalc-0.14
 bin/gchempaint
-bin/gchempaint-0.12
+bin/gchempaint-0.14
 bin/gchemtable
-bin/gchemtable-0.12
+bin/gchemtable-0.14
 bin/gcrystal
-bin/gcrystal-0.12
+bin/gcrystal-0.14
 bin/gspectrum
-bin/gspectrum-0.12
-lib/gchemutils/0.12/plugins/cdx/cdx.la
-lib/gchemutils/0.12/plugins/cdx/plugin.xml
-lib/gchemutils/0.12/plugins/cdxml/cdxml.la
-lib/gchemutils/0.12/plugins/cdxml/plugin.xml
-lib/gchemutils/0.12/plugins/cif/cif.la
-lib/gchemutils/0.12/plugins/cif/plugin.xml
-lib/gchemutils/0.12/plugins/cml/cml.la
-lib/gchemutils/0.12/plugins/cml/plugin.xml
-lib/gchemutils/0.12/plugins/paint/arrows.la
-lib/gchemutils/0.12/plugins/paint/atoms.la
-lib/gchemutils/0.12/plugins/paint/bonds.la
-lib/gchemutils/0.12/plugins/paint/cycles.la
-lib/gchemutils/0.12/plugins/paint/residues.la
-lib/gchemutils/0.12/plugins/paint/selection.la
-lib/gchemutils/0.12/plugins/paint/templates.la
-lib/gchemutils/0.12/plugins/paint/text.la
-lib/gchemutils/0.12/plugins/paint/wikipedia.la
-lib/goffice/0.8.17/plugins/gchemutils/gchemutils.la
-lib/goffice/0.8.17/plugins/gchemutils/plugin.xml
-lib/libgccv-0.12.la
-lib/libgcp-0.12.la
-lib/libgcu-0.12.la
+bin/gspectrum-0.14
+lib/gchemutils/0.14/plugins/cdx/cdx.la
+lib/gchemutils/0.14/plugins/cdx/plugin.xml
+lib/gchemutils/0.14/plugins/cdxml/cdxml.la
+lib/gchemutils/0.14/plugins/cdxml/plugin.xml
+lib/gchemutils/0.14/plugins/cif/cif.la
+lib/gchemutils/0.14/plugins/cif/plugin.xml
+lib/gchemutils/0.14/plugins/cml/cml.la
+lib/gchemutils/0.14/plugins/cml/plugin.xml
+lib/gchemutils/0.14/plugins/nuts/nuts.la
+lib/gchemutils/0.14/plugins/nuts/plugin.xml
+lib/gchemutils/0.14/plugins/paint/arrows.la
+lib/gchemutils/0.14/plugins/paint/atoms.la
+lib/gchemutils/0.14/plugins/paint/bonds.la
+lib/gchemutils/0.14/plugins/paint/cycles.la
+lib/gchemutils/0.14/plugins/paint/residues.la
+lib/gchemutils/0.14/plugins/paint/selection.la
+lib/gchemutils/0.14/plugins/paint/templates.la
+lib/gchemutils/0.14/plugins/paint/text.la
+lib/goffice/0.10/plugins/gchemutils/gchemutils.la
+lib/goffice/0.10/plugins/gchemutils/plugin.xml
+lib/libgccv-0.14.la
+lib/libgcp-0.14.la
+lib/libgcrystal-0.14.la
+lib/libgcu-0.14.la
+lib/libgcugtk-0.14.la
+libexec/babelserver
 man/man1/gchem3d.1
 man/man1/gchemcalc.1
 man/man1/gchempaint.1
 man/man1/gchemtable.1
 man/man1/gcrystal.1
 man/man1/gspectrum.1
-share/applications/gchem3d-0.12.desktop
-share/applications/gchemcalc-0.12.desktop
-share/applications/gchempaint-0.12.desktop
-share/applications/gchemtable-0.12.desktop
-share/applications/gcrystal-0.12.desktop
-share/applications/gspectrum-0.12.desktop
-share/gchemutils/0.12/elecprops.xml
-share/gchemutils/0.12/elements.xml
-share/gchemutils/0.12/isotopes.xml
-share/gchemutils/0.12/paint/templates/haworth.xml
-share/gchemutils/0.12/paint/templates/templates.xml
-share/gchemutils/0.12/paint/themes/ACS_Document_1996
-share/gchemutils/0.12/paint/themes/Wikipedia
-share/gchemutils/0.12/pixmaps/gchempaint_logo.png
-share/gchemutils/0.12/pixmaps/gcrystal_logo.png
-share/gchemutils/0.12/radii.xml
-share/gchemutils/0.12/residues.xml
-share/gchemutils/0.12/space-groups.xml
-share/gchemutils/0.12/ui/calc/gchemcalc.ui
-share/gchemutils/0.12/ui/crystal/atoms.ui
-share/gchemutils/0.12/ui/crystal/bonds.ui
-share/gchemutils/0.12/ui/crystal/cell.ui
-share/gchemutils/0.12/ui/crystal/cleavages.ui
-share/gchemutils/0.12/ui/crystal/docprop.ui
-share/gchemutils/0.12/ui/crystal/lines.ui
-share/gchemutils/0.12/ui/crystal/prefs.ui
-share/gchemutils/0.12/ui/crystal/size.ui
-share/gchemutils/0.12/ui/crystal/view-settings.ui
-share/gchemutils/0.12/ui/libgcu/gcuperiodic.ui
-share/gchemutils/0.12/ui/libgcu/image-resolution.ui
-share/gchemutils/0.12/ui/libgcu/image-size.ui
-share/gchemutils/0.12/ui/libgcu/print-setup.ui
-share/gchemutils/0.12/ui/paint/H-pos.ui
-share/gchemutils/0.12/ui/paint/arrow-object.ui
-share/gchemutils/0.12/ui/paint/arrow.png
-share/gchemutils/0.12/ui/paint/docprop.ui
-share/gchemutils/0.12/ui/paint/newfiledlg.ui
-share/gchemutils/0.12/ui/paint/plugins/arrows/arrowtool.ui
-share/gchemutils/0.12/ui/paint/plugins/arrows/curvedarrowtool.ui
-share/gchemutils/0.12/ui/paint/plugins/atoms/orbital-prop.ui
-share/gchemutils/0.12/ui/paint/plugins/atoms/orbital.ui
-share/gchemutils/0.12/ui/paint/plugins/bonds/bond.ui
-share/gchemutils/0.12/ui/paint/plugins/bonds/chain.ui
-share/gchemutils/0.12/ui/paint/plugins/cycles/cycle.ui
-share/gchemutils/0.12/ui/paint/plugins/cycles/cyclen.ui
-share/gchemutils/0.12/ui/paint/plugins/residues/residues.ui
-share/gchemutils/0.12/ui/paint/plugins/selection/group.ui
-share/gchemutils/0.12/ui/paint/plugins/templates/new-template.ui
-share/gchemutils/0.12/ui/paint/plugins/templates/templates.ui
-share/gchemutils/0.12/ui/paint/plugins/text/fontsel.ui
-share/gchemutils/0.12/ui/paint/preferences.ui
-share/gchemutils/0.12/ui/paint/stringdlg.ui
-share/gchemutils/0.12/ui/paint/tools.ui
-share/gchemutils/0.12/ui/paint/zoom.ui
-share/gchemutils/0.12/ui/table/acidity.ui
-share/gchemutils/0.12/ui/table/block.ui
-share/gchemutils/0.12/ui/table/curve.ui
-share/gchemutils/0.12/ui/table/eltpage.ui
-share/gchemutils/0.12/ui/table/family.ui
-share/gchemutils/0.12/ui/table/state-thermometer.ui
-share/gconf/schemas/gchempaint-arrows.schemas
-share/gconf/schemas/gchempaint.schemas
-share/gconf/schemas/gchemutils.schemas
-share/gconf/schemas/gcrystal.schemas
+share/appdata/gchem3d.appdata.xml
+share/appdata/gchemcalc.appdata.xml
+share/appdata/gchempaint.appdata.xml
+share/appdata/gchemtable.appdata.xml
+share/appdata/gcrystal.appdata.xml
+share/appdata/gspectrum.appdata.xml
+share/applications/gchem3d-0.14.desktop
+share/applications/gchemcalc-0.14.desktop
+share/applications/gchempaint-0.14.desktop
+share/applications/gchemtable-0.14.desktop
+share/applications/gcrystal-0.14.desktop
+share/applications/gspectrum-0.14.desktop
+share/gchemutils/0.14/databases.xml
+share/gchemutils/0.14/elecprops.xml
+share/gchemutils/0.14/elements.xml
+share/gchemutils/0.14/isotopes.xml
+share/gchemutils/0.14/paint/templates/haworth.xml
+share/gchemutils/0.14/paint/templates/templates.xml
+share/gchemutils/0.14/paint/themes/ACS_Document_1996
+share/gchemutils/0.14/paint/themes/Gcp-Modern
+share/gchemutils/0.14/paint/themes/Wikipedia
+share/gchemutils/0.14/pixmaps/gchempaint_logo.png
+share/gchemutils/0.14/pixmaps/gcrystal_logo.png
+share/gchemutils/0.14/radii.xml
+share/gchemutils/0.14/residues.xml
+share/gchemutils/0.14/space-groups.xml
+share/gchemutils/0.14/ui/calc/gchemcalc.ui
+share/gchemutils/0.14/ui/crystal/atoms.ui
+share/gchemutils/0.14/ui/crystal/bonds.ui
+share/gchemutils/0.14/ui/crystal/cell.ui
+share/gchemutils/0.14/ui/crystal/cleavages.ui
+share/gchemutils/0.14/ui/crystal/docprop.ui
+share/gchemutils/0.14/ui/crystal/lines.ui
+share/gchemutils/0.14/ui/crystal/prefs.ui
+share/gchemutils/0.14/ui/crystal/size.ui
+share/gchemutils/0.14/ui/crystal/view-settings.ui
+share/gchemutils/0.14/ui/libgcu/gcuperiodic.ui
+share/gchemutils/0.14/ui/libgcu/image-resolution.ui
+share/gchemutils/0.14/ui/libgcu/image-size.ui
+share/gchemutils/0.14/ui/libgcu/print-setup.ui
+share/gchemutils/0.14/ui/libgcu/stringdlg.ui
+share/gchemutils/0.14/ui/libgcu/stringinputdlg.ui
+share/gchemutils/0.14/ui/paint/H-pos.ui
+share/gchemutils/0.14/ui/paint/arrow-object.ui
+share/gchemutils/0.14/ui/paint/arrow.png
+share/gchemutils/0.14/ui/paint/docprop.ui
+share/gchemutils/0.14/ui/paint/newfiledlg.ui
+share/gchemutils/0.14/ui/paint/plugins/arrows/arrowtool.ui
+share/gchemutils/0.14/ui/paint/plugins/arrows/curvedarrowtool.ui
+share/gchemutils/0.14/ui/paint/plugins/atoms/orbital-prop.ui
+share/gchemutils/0.14/ui/paint/plugins/atoms/orbital.ui
+share/gchemutils/0.14/ui/paint/plugins/bonds/bond.ui
+share/gchemutils/0.14/ui/paint/plugins/bonds/chain.ui
+share/gchemutils/0.14/ui/paint/plugins/bonds/newman.ui
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+share/gnome/help/gchempaint-0.14/C/figures/selection.png
+share/gnome/help/gchempaint-0.14/C/figures/stereobonds.png
+share/gnome/help/gchempaint-0.14/C/figures/templates-tools.png
+share/gnome/help/gchempaint-0.14/C/figures/templates.png
+share/gnome/help/gchempaint-0.14/C/figures/text-opt.png
+share/gnome/help/gchempaint-0.14/C/figures/text.png
+share/gnome/help/gchempaint-0.14/C/figures/toolbox.png
+share/gnome/help/gchempaint-0.14/C/gchempaint-0.14.xml
+share/gnome/help/gchempaint-0.14/C/legal.xml
+share/gnome/help/gchemtable-0.14/C/figures/add-plot.png
+share/gnome/help/gchemtable-0.14/C/figures/atomic-radii.png
+share/gnome/help/gchemtable-0.14/C/figures/blocs.png
+share/gnome/help/gchemtable-0.14/C/figures/choose-data.png
+share/gnome/help/gchemtable-0.14/C/figures/curve.png
+share/gnome/help/gchemtable-0.14/C/figures/elec.png
+share/gnome/help/gchemtable-0.14/C/figures/electronegativity.png
+share/gnome/help/gchemtable-0.14/C/figures/family.png
+share/gnome/help/gchemtable-0.14/C/figures/graph-guru.png
+share/gnome/help/gchemtable-0.14/C/figures/main.png
+share/gnome/help/gchemtable-0.14/C/figures/new-chart-guru.png
+share/gnome/help/gchemtable-0.14/C/figures/new-chart.png
+share/gnome/help/gchemtable-0.14/C/figures/page-setup.png
+share/gnome/help/gchemtable-0.14/C/figures/print-scale.png
+share/gnome/help/gchemtable-0.14/C/figures/radii.png
+share/gnome/help/gchemtable-0.14/C/figures/start.png
+share/gnome/help/gchemtable-0.14/C/figures/state.png
+share/gnome/help/gchemtable-0.14/C/figures/thermo.png
+share/gnome/help/gchemtable-0.14/C/figures/tip.png
+share/gnome/help/gchemtable-0.14/C/gchemtable-0.14.xml
+share/gnome/help/gchemtable-0.14/C/legal.xml
+share/gnome/help/gcrystal-0.14/C/figures/atoms-dlg.png
+share/gnome/help/gcrystal-0.14/C/figures/cleavages-dlg.png
+share/gnome/help/gcrystal-0.14/C/figures/default-view.png
+share/gnome/help/gcrystal-0.14/C/figures/lattice-dlg.png
+share/gnome/help/gcrystal-0.14/C/figures/lines-dlg.png
+share/gnome/help/gcrystal-0.14/C/figures/main-window.png
+share/gnome/help/gcrystal-0.14/C/figures/page-setup.png
+share/gnome/help/gcrystal-0.14/C/figures/print-res.png
+share/gnome/help/gcrystal-0.14/C/figures/print-scale.png
+share/gnome/help/gcrystal-0.14/C/figures/size-dlg.png
+share/gnome/help/gcrystal-0.14/C/figures/view-settings.png
+share/gnome/help/gcrystal-0.14/C/gcrystal-0.14.xml
+share/gnome/help/gcrystal-0.14/C/legal.xml
+share/gnome/help/gspectrum-0.14/C/figures/fid-tools.png
+share/gnome/help/gspectrum-0.14/C/figures/gspectrum.png
+share/gnome/help/gspectrum-0.14/C/figures/ir-tools.png
+share/gnome/help/gspectrum-0.14/C/figures/nmr-tools.png
+share/gnome/help/gspectrum-0.14/C/figures/page-setup.png
+share/gnome/help/gspectrum-0.14/C/figures/print-scale.png
+share/gnome/help/gspectrum-0.14/C/figures/simple-toolbar.png
+share/gnome/help/gspectrum-0.14/C/figures/uv-vis-tools.png
+share/gnome/help/gspectrum-0.14/C/gspectrum-0.14.xml
+share/gnome/help/gspectrum-0.14/C/legal.xml
+share/icons/hicolor/scalable/apps/gchem3d.svg
+share/icons/hicolor/scalable/apps/gchemcalc.svg
+share/icons/hicolor/scalable/apps/gchempaint.svg
+share/icons/hicolor/scalable/apps/gchemtable.svg
+share/icons/hicolor/scalable/apps/gcrystal.svg
+share/icons/hicolor/scalable/apps/gspectrum.svg
+share/icons/hicolor/scalable/mimetypes/application-x-gchempaint.svg
+share/icons/hicolor/scalable/mimetypes/application-x-gcrystal.svg
+share/locale/de/LC_MESSAGES/gchemutils-0.14.mo
+share/locale/el/LC_MESSAGES/gchemutils-0.14.mo
+share/locale/es/LC_MESSAGES/gchemutils-0.14.mo
+share/locale/eu/LC_MESSAGES/gchemutils-0.14.mo
+share/locale/fr/LC_MESSAGES/gchemutils-0.14.mo
+share/locale/it/LC_MESSAGES/gchemutils-0.14.mo
+share/locale/pl/LC_MESSAGES/gchemutils-0.14.mo
+share/locale/pt_BR/LC_MESSAGES/gchemutils-0.14.mo
+share/locale/ru/LC_MESSAGES/gchemutils-0.14.mo
+share/locale/zh_CN/LC_MESSAGES/gchemutils-0.14.mo
+share/locale/zh_TW/LC_MESSAGES/gchemutils-0.14.mo
 share/mime/packages/gchemutils.xml
 share/mimelnk/application/x-gchempaint.desktop
 share/mimelnk/application/x-gcrystal.desktop
-share/omf/gchem3d-0.12/gchem3d-0.12-C.omf
-share/omf/gchemcalc-0.12/gchemcalc-0.12-C.omf
-share/omf/gchempaint-0.12/gchempaint-0.12-C.omf
-share/omf/gchemtable-0.12/gchemtable-0.12-C.omf
-share/omf/gcrystal-0.12/gcrystal-0.12-C.omf
-share/omf/gspectrum-0.12/gspectrum-0.12-C.omf
+share/omf/gchem3d-0.14/gchem3d-0.14-C.omf
+share/omf/gchemcalc-0.14/gchemcalc-0.14-C.omf
+share/omf/gchempaint-0.14/gchempaint-0.14-C.omf
+share/omf/gchemtable-0.14/gchemtable-0.14-C.omf
+share/omf/gcrystal-0.14/gcrystal-0.14-C.omf
+share/omf/gspectrum-0.14/gspectrum-0.14-C.omf

Index: pkgsrc/biology/gnome-chemistry-utils/distinfo
diff -u pkgsrc/biology/gnome-chemistry-utils/distinfo:1.7 pkgsrc/biology/gnome-chemistry-utils/distinfo:1.8
--- pkgsrc/biology/gnome-chemistry-utils/distinfo:1.7   Mon Nov  2 18:42:21 2015
+++ pkgsrc/biology/gnome-chemistry-utils/distinfo       Mon Jun 29 13:04:48 2020
@@ -1,10 +1,7 @@
-$NetBSD: distinfo,v 1.7 2015/11/02 18:42:21 agc Exp $
+$NetBSD: distinfo,v 1.8 2020/06/29 13:04:48 ryoon Exp $
 
-SHA1 (gnome-chemistry-utils-0.12.13.tar.bz2) = a3d83f281ccd7fdbc98e14e295093287d8648a69
-RMD160 (gnome-chemistry-utils-0.12.13.tar.bz2) = 259509c4e9086fc40e91d1f2f93ad5bad9317b8c
-SHA512 (gnome-chemistry-utils-0.12.13.tar.bz2) = 70180d9bc51fcef00b979ac0ed573435e17ab626e816a9b0a91cbddf9fb76866c9726802cc741c52fa9243a327d5cd3cdb17e8404916de7447dbd46628adde6d
-Size (gnome-chemistry-utils-0.12.13.tar.bz2) = 5399998 bytes
-SHA1 (patch-libs_gccv_text.cc) = 798aa83faf31c0e63c88859ccca9ab40c25e5f6d
-SHA1 (patch-libs_gcu_loader-error.h) = 8e223394ac6fb6a17cc23439fc2e3bb2e3bc5440
-SHA1 (patch-libs_gcu_spectrumdoc.cc) = 6d4d87c128096006fd384fc058c7942b49df8646
-SHA1 (patch-programs_crystal_document.cc) = 192b376922d39796780863720459ee3ef025bfed
+SHA1 (gnome-chemistry-utils-0.14.16.tar.bz2) = 3ae7d3dfb1a5c9cd119c84a789e6571f44b62da7
+RMD160 (gnome-chemistry-utils-0.14.16.tar.bz2) = c4cedcc6aa1cdeae071b3a9a25d3c235f12eb6e7
+SHA512 (gnome-chemistry-utils-0.14.16.tar.bz2) = 7ae652edcee9707c731d77f42899dbebb16c058034d234ea95d62351f8d7c1b87a80ebbf37960721585f8d2af2b5017cb072d655a3c2d01a3a2b52fa1a17b34c
+Size (gnome-chemistry-utils-0.14.16.tar.bz2) = 6701094 bytes
+SHA1 (patch-configure) = 71e51e882eae3ea5920efdfd7f065f497ab2268d

Added files:

Index: pkgsrc/biology/gnome-chemistry-utils/patches/patch-configure
diff -u /dev/null pkgsrc/biology/gnome-chemistry-utils/patches/patch-configure:1.1
--- /dev/null   Mon Jun 29 13:04:48 2020
+++ pkgsrc/biology/gnome-chemistry-utils/patches/patch-configure        Mon Jun 29 13:04:48 2020
@@ -0,0 +1,56 @@
+$NetBSD: patch-configure,v 1.1 2020/06/29 13:04:48 ryoon Exp $
+
+* Use openbabel 3.
+
+--- configure.orig     2016-11-23 13:06:33.000000000 +0000
++++ configure
+@@ -19695,12 +19695,12 @@ if test -n "$openbabel_CFLAGS"; then
+     pkg_cv_openbabel_CFLAGS="$openbabel_CFLAGS"
+  elif test -n "$PKG_CONFIG"; then
+     if test -n "$PKG_CONFIG" && \
+-    { { $as_echo "$as_me:${as_lineno-$LINENO}: \$PKG_CONFIG --exists --print-errors \"openbabel-2.0 >= 2.3.0\""; } >&5
+-  ($PKG_CONFIG --exists --print-errors "openbabel-2.0 >= 2.3.0") 2>&5
++    { { $as_echo "$as_me:${as_lineno-$LINENO}: \$PKG_CONFIG --exists --print-errors \"openbabel-3 >= 3.0.0\""; } >&5
++  ($PKG_CONFIG --exists --print-errors "openbabel-3 >= 3.0.0") 2>&5
+   ac_status=$?
+   $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
+   test $ac_status = 0; }; then
+-  pkg_cv_openbabel_CFLAGS=`$PKG_CONFIG --cflags "openbabel-2.0 >= 2.3.0" 2>/dev/null`
++  pkg_cv_openbabel_CFLAGS=`$PKG_CONFIG --cflags "openbabel-3 >= 3.0.0" 2>/dev/null`
+                     test "x$?" != "x0" && pkg_failed=yes
+ else
+   pkg_failed=yes
+@@ -19712,12 +19712,12 @@ if test -n "$openbabel_LIBS"; then
+     pkg_cv_openbabel_LIBS="$openbabel_LIBS"
+  elif test -n "$PKG_CONFIG"; then
+     if test -n "$PKG_CONFIG" && \
+-    { { $as_echo "$as_me:${as_lineno-$LINENO}: \$PKG_CONFIG --exists --print-errors \"openbabel-2.0 >= 2.3.0\""; } >&5
+-  ($PKG_CONFIG --exists --print-errors "openbabel-2.0 >= 2.3.0") 2>&5
++    { { $as_echo "$as_me:${as_lineno-$LINENO}: \$PKG_CONFIG --exists --print-errors \"openbabel-3 >= 3.0.0\""; } >&5
++  ($PKG_CONFIG --exists --print-errors "openbabel-3 >= 3.0.0") 2>&5
+   ac_status=$?
+   $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
+   test $ac_status = 0; }; then
+-  pkg_cv_openbabel_LIBS=`$PKG_CONFIG --libs "openbabel-2.0 >= 2.3.0" 2>/dev/null`
++  pkg_cv_openbabel_LIBS=`$PKG_CONFIG --libs "openbabel-3 >= 3.0.0" 2>/dev/null`
+                     test "x$?" != "x0" && pkg_failed=yes
+ else
+   pkg_failed=yes
+@@ -19738,14 +19738,14 @@ else
+         _pkg_short_errors_supported=no
+ fi
+         if test $_pkg_short_errors_supported = yes; then
+-              openbabel_PKG_ERRORS=`$PKG_CONFIG --short-errors --print-errors --cflags --libs "openbabel-2.0 >= 2.3.0" 2>&1`
++              openbabel_PKG_ERRORS=`$PKG_CONFIG --short-errors --print-errors --cflags --libs "openbabel-3 >= 3.0.0" 2>&1`
+         else
+-              openbabel_PKG_ERRORS=`$PKG_CONFIG --print-errors --cflags --libs "openbabel-2.0 >= 2.3.0" 2>&1`
++              openbabel_PKG_ERRORS=`$PKG_CONFIG --print-errors --cflags --libs "openbabel-3 >= 3.0.0" 2>&1`
+         fi
+       # Put the nasty error message in config.log where it belongs
+       echo "$openbabel_PKG_ERRORS" >&5
+ 
+-      as_fn_error $? "Package requirements (openbabel-2.0 >= 2.3.0) were not met:
++      as_fn_error $? "Package requirements (openbabel-3 >= 3.0.0) were not met:
+ 
+ $openbabel_PKG_ERRORS
+ 



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