CVS commit: pkgsrc/biology/vsearch

["Jason Bacon" <bacon%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   bacon
Date:           Sat May 11 14:27:18 UTC 2019

Modified Files:
        pkgsrc/biology/vsearch: Makefile PLIST distinfo
        pkgsrc/biology/vsearch/patches: patch-configure.ac
            patch-src_Makefile.am
Removed Files:
        pkgsrc/biology/vsearch/patches: patch-src_city.cc patch-src_vsearch.h

Log Message:
biology/vsearch: Upgrade to 2.13.4

pkgsrc patches incorporated into upstream release


To generate a diff of this commit:
cvs rdiff -u -r1.1 -r1.2 pkgsrc/biology/vsearch/Makefile \
    pkgsrc/biology/vsearch/PLIST pkgsrc/biology/vsearch/distinfo
cvs rdiff -u -r1.1 -r1.2 pkgsrc/biology/vsearch/patches/patch-configure.ac \
    pkgsrc/biology/vsearch/patches/patch-src_Makefile.am
cvs rdiff -u -r1.1 -r0 pkgsrc/biology/vsearch/patches/patch-src_city.cc \
    pkgsrc/biology/vsearch/patches/patch-src_vsearch.h

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/biology/vsearch/Makefile
diff -u pkgsrc/biology/vsearch/Makefile:1.1 pkgsrc/biology/vsearch/Makefile:1.2
--- pkgsrc/biology/vsearch/Makefile:1.1 Fri May 10 16:19:22 2019
+++ pkgsrc/biology/vsearch/Makefile     Sat May 11 14:27:18 2019
@@ -1,6 +1,6 @@
-# $NetBSD: Makefile,v 1.1 2019/05/10 16:19:22 bacon Exp $
+# $NetBSD: Makefile,v 1.2 2019/05/11 14:27:18 bacon Exp $
 
-DISTNAME=      vsearch-2.13.3
+DISTNAME=      vsearch-2.13.4
 CATEGORIES=    biology
 MASTER_SITES=  ${MASTER_SITE_GITHUB:=torognes/}
 GITHUB_TAG=    v${PKGVERSION_NOREV}
Index: pkgsrc/biology/vsearch/PLIST
diff -u pkgsrc/biology/vsearch/PLIST:1.1 pkgsrc/biology/vsearch/PLIST:1.2
--- pkgsrc/biology/vsearch/PLIST:1.1    Fri May 10 16:19:22 2019
+++ pkgsrc/biology/vsearch/PLIST        Sat May 11 14:27:18 2019
@@ -1,3 +1,3 @@
-@comment $NetBSD: PLIST,v 1.1 2019/05/10 16:19:22 bacon Exp $
+@comment $NetBSD: PLIST,v 1.2 2019/05/11 14:27:18 bacon Exp $
 bin/vsearch
 man/man1/vsearch.1
Index: pkgsrc/biology/vsearch/distinfo
diff -u pkgsrc/biology/vsearch/distinfo:1.1 pkgsrc/biology/vsearch/distinfo:1.2
--- pkgsrc/biology/vsearch/distinfo:1.1 Fri May 10 16:19:22 2019
+++ pkgsrc/biology/vsearch/distinfo     Sat May 11 14:27:18 2019
@@ -1,10 +1,8 @@
-$NetBSD: distinfo,v 1.1 2019/05/10 16:19:22 bacon Exp $
+$NetBSD: distinfo,v 1.2 2019/05/11 14:27:18 bacon Exp $
 
-SHA1 (vsearch-2.13.3.tar.gz) = 064bfbef4271c254848f18b03bed7c41a15ae2ab
-RMD160 (vsearch-2.13.3.tar.gz) = d8f00a88449fb827878b7e301f9127799ce3d43c
-SHA512 (vsearch-2.13.3.tar.gz) = a3c539d60ed6db8bdb964a1aee18e79a6b8ed397dc01d47aad873019a8f123ed8892b08536dfd5f785f8d327fee75d42b4a744f354f5c6e3bb03d0bf10f054e5
-Size (vsearch-2.13.3.tar.gz) = 233846 bytes
+SHA1 (vsearch-2.13.4.tar.gz) = adb36075cf873620aebae6ab25f33cbac002065e
+RMD160 (vsearch-2.13.4.tar.gz) = e65a908014cbab903bef81b55c9e67003bb55458
+SHA512 (vsearch-2.13.4.tar.gz) = 31cc321f96309385414f3847a4cb29a5b3e43e42870b3f41e34fa0e6b3a928b2dd306edeff896ffa6bca85ecea776b33655611fa62749e9b29e86bf1adbe7de3
+Size (vsearch-2.13.4.tar.gz) = 234364 bytes
 SHA1 (patch-configure.ac) = 536a8565514cf9b43f4f8892d1cba0444f752c5e
 SHA1 (patch-src_Makefile.am) = bcdd1bbe9f04197084825e2c3560ba27a750f124
-SHA1 (patch-src_city.cc) = 3a5bcbca0a0c733a32a9d152189de10df3cb515f
-SHA1 (patch-src_vsearch.h) = 26b8dc6ce0448e7463ee1c3ff73747ad07286543

Index: pkgsrc/biology/vsearch/patches/patch-configure.ac
diff -u pkgsrc/biology/vsearch/patches/patch-configure.ac:1.1 pkgsrc/biology/vsearch/patches/patch-configure.ac:1.2
--- pkgsrc/biology/vsearch/patches/patch-configure.ac:1.1       Fri May 10 16:19:22 2019
+++ pkgsrc/biology/vsearch/patches/patch-configure.ac   Sat May 11 14:27:18 2019
@@ -1,4 +1,4 @@
-$NetBSD: patch-configure.ac,v 1.1 2019/05/10 16:19:22 bacon Exp $
+$NetBSD: patch-configure.ac,v 1.2 2019/05/11 14:27:18 bacon Exp $
 
 # Respect build env
 
Index: pkgsrc/biology/vsearch/patches/patch-src_Makefile.am
diff -u pkgsrc/biology/vsearch/patches/patch-src_Makefile.am:1.1 pkgsrc/biology/vsearch/patches/patch-src_Makefile.am:1.2
--- pkgsrc/biology/vsearch/patches/patch-src_Makefile.am:1.1    Fri May 10 16:19:22 2019
+++ pkgsrc/biology/vsearch/patches/patch-src_Makefile.am        Sat May 11 14:27:18 2019
@@ -1,4 +1,4 @@
-$NetBSD: patch-src_Makefile.am,v 1.1 2019/05/10 16:19:22 bacon Exp $
+$NetBSD: patch-src_Makefile.am,v 1.2 2019/05/11 14:27:18 bacon Exp $
 
 # Respect build env