CVS commit: pkgsrc/math/py-tables

["Adam Ciarcinski" <adam%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   adam
Date:           Wed Mar 20 16:08:06 UTC 2019

Modified Files:
        pkgsrc/math/py-tables: Makefile PLIST distinfo
Added Files:
        pkgsrc/math/py-tables: ALTERNATIVES

Log Message:
py-tables: updated to 3.5.1

Changes from 3.5.0 to 3.5.1
- Maintenance release to fix how PyPi repo is handling wheel versions.

Changes from 3.4.4 to 3.5.0
Improvements
- When copying data from native HDF5 files with padding in compound types,
  the padding is not removed now by default.  This allows for better
  compatibility with existing HDF5 applications that expect the padding
  to stay there.
  Also, when the description is a NumPy struct array with padding, this
  is honored now.  The previous behaviour (i.e. getting rid of paddings) can
  be replicated by passing the new allow_padding parameter when opening
  a file.  For some examples, see the new examples/tables-with-padding.py
  and examples/attrs-with-padding.py.
- Added a new flag --dont-allow-padding in ptrepack utility so as to
  replicate the previous behaviour of removing padding during file copies.
  The default is to honor the original padding in copies.
- Improve compatibility with numpy 1.16.
- Improve detection of the LZO2 library at build time.
- Suppress several warnings.
- Add AVX2 support for Windows.


To generate a diff of this commit:
cvs rdiff -u -r0 -r1.1 pkgsrc/math/py-tables/ALTERNATIVES
cvs rdiff -u -r1.1 -r1.2 pkgsrc/math/py-tables/Makefile \
    pkgsrc/math/py-tables/PLIST pkgsrc/math/py-tables/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/math/py-tables/Makefile
diff -u pkgsrc/math/py-tables/Makefile:1.1 pkgsrc/math/py-tables/Makefile:1.2
--- pkgsrc/math/py-tables/Makefile:1.1  Wed Jul  4 06:46:49 2018
+++ pkgsrc/math/py-tables/Makefile      Wed Mar 20 16:08:06 2019
@@ -1,6 +1,6 @@
-# $NetBSD: Makefile,v 1.1 2018/07/04 06:46:49 adam Exp $
+# $NetBSD: Makefile,v 1.2 2019/03/20 16:08:06 adam Exp $
 
-DISTNAME=      tables-3.4.4
+DISTNAME=      tables-3.5.1
 PKGNAME=       ${PYPKGPREFIX}-${DISTNAME}
 CATEGORIES=    math python
 MASTER_SITES=  ${MASTER_SITE_PYPI:=t/tables/}
@@ -16,17 +16,18 @@ PYSETUPBUILDARGS+=  --hdf5=${BUILDLINK_PR
 PYSETUPBUILDARGS+=     --lzo=${BUILDLINK_PREFIX.lzo}
 
 DEPENDS+=      ${PYPKGPREFIX}-cython-[0-9]*:../../devel/py-cython
-DEPENDS+=      ${PYPKGPREFIX}-numexpr>=2.5.2:../../math/py-numexpr
+DEPENDS+=      ${PYPKGPREFIX}-numexpr>=2.6.2:../../math/py-numexpr
+DEPENDS+=      ${PYPKGPREFIX}-mock>=2.0:../../devel/py-mock
 DEPENDS+=      ${PYPKGPREFIX}-six>=1.9.0:../../lang/py-six
 
-USE_LANGUAGES=         c c++
+USE_LANGUAGES= c c++
 
 post-install:
        cd ${DESTDIR}${PREFIX}/bin && \
-               ${MV} pt2to3 pt2to3${PYVERSSUFFIX} && \
-               ${MV} ptdump ptdump${PYVERSSUFFIX} && \
-               ${MV} ptrepack ptrepack${PYVERSSUFFIX} && \
-               ${MV} pttree pttree${PYVERSSUFFIX} || ${TRUE}
+               ${MV} pt2to3 pt2to3-${PYVERSSUFFIX} && \
+               ${MV} ptdump ptdump-${PYVERSSUFFIX} && \
+               ${MV} ptrepack ptrepack-${PYVERSSUFFIX} && \
+               ${MV} pttree pttree-${PYVERSSUFFIX} || ${TRUE}
 
 do-test:
        cd ${WRKSRC}/tables/tests && ${PYTHONBIN} test_all.py
Index: pkgsrc/math/py-tables/PLIST
diff -u pkgsrc/math/py-tables/PLIST:1.1 pkgsrc/math/py-tables/PLIST:1.2
--- pkgsrc/math/py-tables/PLIST:1.1     Wed Jul  4 06:46:49 2018
+++ pkgsrc/math/py-tables/PLIST Wed Mar 20 16:08:06 2019
@@ -1,8 +1,8 @@
-@comment $NetBSD: PLIST,v 1.1 2018/07/04 06:46:49 adam Exp $
-bin/pt2to3${PYVERSSUFFIX}
-bin/ptdump${PYVERSSUFFIX}
-bin/ptrepack${PYVERSSUFFIX}
-bin/pttree${PYVERSSUFFIX}
+@comment $NetBSD: PLIST,v 1.2 2019/03/20 16:08:06 adam Exp $
+bin/pt2to3-${PYVERSSUFFIX}
+bin/ptdump-${PYVERSSUFFIX}
+bin/ptrepack-${PYVERSSUFFIX}
+bin/pttree-${PYVERSSUFFIX}
 ${PYSITELIB}/${EGG_INFODIR}/PKG-INFO
 ${PYSITELIB}/${EGG_INFODIR}/SOURCES.txt
 ${PYSITELIB}/${EGG_INFODIR}/dependency_links.txt
Index: pkgsrc/math/py-tables/distinfo
diff -u pkgsrc/math/py-tables/distinfo:1.1 pkgsrc/math/py-tables/distinfo:1.2
--- pkgsrc/math/py-tables/distinfo:1.1  Wed Jul  4 06:46:49 2018
+++ pkgsrc/math/py-tables/distinfo      Wed Mar 20 16:08:06 2019
@@ -1,6 +1,6 @@
-$NetBSD: distinfo,v 1.1 2018/07/04 06:46:49 adam Exp $
+$NetBSD: distinfo,v 1.2 2019/03/20 16:08:06 adam Exp $
 
-SHA1 (tables-3.4.4.tar.gz) = 79fa344fa7a2e3ad0a5b154810a72976841ca864
-RMD160 (tables-3.4.4.tar.gz) = da09f5344098d9ed904d6a408f4fa450392b9928
-SHA512 (tables-3.4.4.tar.gz) = 2d0cdd36a6f14702f424773b64187d1980d73a72525ead43b272776bb32b2ebc4c6ea0b7e3343c8600d7f62c42d008b5e835439af30e76ea11c7504666631ddf
-Size (tables-3.4.4.tar.gz) = 4626053 bytes
+SHA1 (tables-3.5.1.tar.gz) = cb2183df7032dfe48ee69546c24ed35533b2516a
+RMD160 (tables-3.5.1.tar.gz) = f42e8d5d1d3dcf4e6a7111d65921ac477671b229
+SHA512 (tables-3.5.1.tar.gz) = a3064951fd3f91156c539279aed9ac13a8f07de6e0f0dbdaf7941fcb6b812b903ac28b98281b3e1dd3f0e685714c4ae0471ffbd1dda80402212a466dd8f25843
+Size (tables-3.5.1.tar.gz) = 8306669 bytes

Added files:

Index: pkgsrc/math/py-tables/ALTERNATIVES
diff -u /dev/null pkgsrc/math/py-tables/ALTERNATIVES:1.1
--- /dev/null   Wed Mar 20 16:08:06 2019
+++ pkgsrc/math/py-tables/ALTERNATIVES  Wed Mar 20 16:08:06 2019
@@ -0,0 +1,4 @@
+bin/pt2to3 @PREFIX@/bin/pt2to3-@PYVERSSUFFIX@
+bin/ptdump @PREFIX@/bin/ptdump-@PYVERSSUFFIX@
+bin/ptrepack @PREFIX@/bin/ptrepack-@PYVERSSUFFIX@
+bin/pttree @PREFIX@/bin/pttree-@PYVERSSUFFIX@