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CVS commit: pkgsrc/math/py-scikit-learn
Module Name: pkgsrc
Committed By: minskim
Date: Tue Nov 21 18:45:29 UTC 2017
Modified Files:
pkgsrc/math/py-scikit-learn: Makefile PLIST distinfo
Log Message:
math/py-scikit-learn: Update to 0.19.1
Notable new features since 0.18.2:
- `neighbors.LocalOutlierFactor` for anomaly detection
- `preprocessing.QuantileTransformer` for robust feature transformation
- `multioutput.ClassifierChain` meta-estimator to simply account
for dependencies between classes in multilabel problem
- multiplicative update in `decomposition.NMF`
- multinomial `linear_model.LogisticRegression` with L1 loss
To generate a diff of this commit:
cvs rdiff -u -r1.2 -r1.3 pkgsrc/math/py-scikit-learn/Makefile \
pkgsrc/math/py-scikit-learn/distinfo
cvs rdiff -u -r1.1 -r1.2 pkgsrc/math/py-scikit-learn/PLIST
Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.
Modified files:
Index: pkgsrc/math/py-scikit-learn/Makefile
diff -u pkgsrc/math/py-scikit-learn/Makefile:1.2 pkgsrc/math/py-scikit-learn/Makefile:1.3
--- pkgsrc/math/py-scikit-learn/Makefile:1.2 Tue Nov 14 22:56:37 2017
+++ pkgsrc/math/py-scikit-learn/Makefile Tue Nov 21 18:45:28 2017
@@ -1,6 +1,6 @@
-# $NetBSD: Makefile,v 1.2 2017/11/14 22:56:37 minskim Exp $
+# $NetBSD: Makefile,v 1.3 2017/11/21 18:45:28 minskim Exp $
-DISTNAME= scikit-learn-0.18.2
+DISTNAME= scikit-learn-0.19.1
PKGNAME= ${PYPKGPREFIX}-${DISTNAME}
CATEGORIES= math
MASTER_SITES= ${MASTER_SITE_PYPI:=s/scikit-learn/}
@@ -10,6 +10,7 @@ HOMEPAGE= http://scikit-learn.org/
COMMENT= Machine learning algorithms for Python
LICENSE= modified-bsd
+BUILD_DEPENDS+= ${PYPKGPREFIX}-nose-[0-9]*:../../devel/py-nose
DEPENDS+= ${PYPKGPREFIX}-scipy>=0.15.0:../../math/py-scipy
USE_LANGUAGES= c c++ fortran
@@ -17,6 +18,6 @@ USE_LANGUAGES= c c++ fortran
.include "../../lang/python/egg.mk"
.include "../../math/blas/buildlink3.mk"
.include "../../math/lapack/buildlink3.mk"
-BUILDLINK_API_DEPENDS.py-numpy+= ${PYPKGPREFIX}-numpy>=1.6.1
+BUILDLINK_API_DEPENDS.py-numpy+= ${PYPKGPREFIX}-numpy>=1.8.2
.include "../../math/py-numpy/buildlink3.mk"
.include "../../mk/bsd.pkg.mk"
Index: pkgsrc/math/py-scikit-learn/distinfo
diff -u pkgsrc/math/py-scikit-learn/distinfo:1.2 pkgsrc/math/py-scikit-learn/distinfo:1.3
--- pkgsrc/math/py-scikit-learn/distinfo:1.2 Tue Nov 14 22:56:37 2017
+++ pkgsrc/math/py-scikit-learn/distinfo Tue Nov 21 18:45:28 2017
@@ -1,6 +1,6 @@
-$NetBSD: distinfo,v 1.2 2017/11/14 22:56:37 minskim Exp $
+$NetBSD: distinfo,v 1.3 2017/11/21 18:45:28 minskim Exp $
-SHA1 (scikit-learn-0.18.2.tar.gz) = 0931b7d7c9db97b02fb4de34c4e24a01e2bf000b
-RMD160 (scikit-learn-0.18.2.tar.gz) = 037129c5d196a55f2b0359f171616c9922b12d4d
-SHA512 (scikit-learn-0.18.2.tar.gz) = 7c5c7bdd577ad215790654ce1eff6e802aebe53283ab6c5f12684cf99aeecc8976f9a9803f619f549d4d03be0d7634f249046e4b4f15afa12aecb2697e2e0b05
-Size (scikit-learn-0.18.2.tar.gz) = 9224516 bytes
+SHA1 (scikit-learn-0.19.1.tar.gz) = 3a3b4d6f27c6bdf12f870a7d78af22e1cdec9eb6
+RMD160 (scikit-learn-0.19.1.tar.gz) = dfb92fedadc1fecd9934f85321156f3f5d197a2e
+SHA512 (scikit-learn-0.19.1.tar.gz) = a783067d8b69c8720d00b443d985c32ab366c14e49184ebc4b73d8a8bfd28311461013b17c221a9b64d3a3faa2e46ce1badf77e340f8ae3b2bf08d95ecce0b2c
+Size (scikit-learn-0.19.1.tar.gz) = 9526647 bytes
Index: pkgsrc/math/py-scikit-learn/PLIST
diff -u pkgsrc/math/py-scikit-learn/PLIST:1.1 pkgsrc/math/py-scikit-learn/PLIST:1.2
--- pkgsrc/math/py-scikit-learn/PLIST:1.1 Wed Jul 5 21:31:28 2017
+++ pkgsrc/math/py-scikit-learn/PLIST Tue Nov 21 18:45:28 2017
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.1 2017/07/05 21:31:28 minskim Exp $
+@comment $NetBSD: PLIST,v 1.2 2017/11/21 18:45:28 minskim Exp $
${PYSITELIB}/${EGG_INFODIR}/PKG-INFO
${PYSITELIB}/${EGG_INFODIR}/SOURCES.txt
${PYSITELIB}/${EGG_INFODIR}/dependency_links.txt
@@ -33,8 +33,8 @@ ${PYSITELIB}/sklearn/cluster/_feature_ag
${PYSITELIB}/sklearn/cluster/_feature_agglomeration.pyc
${PYSITELIB}/sklearn/cluster/_feature_agglomeration.pyo
${PYSITELIB}/sklearn/cluster/_hierarchical.so
-${PYSITELIB}/sklearn/cluster/_k_means.so
${PYSITELIB}/sklearn/cluster/_k_means_elkan.so
+${PYSITELIB}/sklearn/cluster/_k_means.so
${PYSITELIB}/sklearn/cluster/affinity_propagation_.py
${PYSITELIB}/sklearn/cluster/affinity_propagation_.pyc
${PYSITELIB}/sklearn/cluster/affinity_propagation_.pyo
@@ -161,15 +161,17 @@ ${PYSITELIB}/sklearn/datasets/data/digit
${PYSITELIB}/sklearn/datasets/data/iris.csv
${PYSITELIB}/sklearn/datasets/data/linnerud_exercise.csv
${PYSITELIB}/sklearn/datasets/data/linnerud_physiological.csv
+${PYSITELIB}/sklearn/datasets/data/wine_data.csv
${PYSITELIB}/sklearn/datasets/descr/boston_house_prices.rst
${PYSITELIB}/sklearn/datasets/descr/breast_cancer.rst
${PYSITELIB}/sklearn/datasets/descr/diabetes.rst
${PYSITELIB}/sklearn/datasets/descr/digits.rst
${PYSITELIB}/sklearn/datasets/descr/iris.rst
${PYSITELIB}/sklearn/datasets/descr/linnerud.rst
-${PYSITELIB}/sklearn/datasets/images/README.txt
+${PYSITELIB}/sklearn/datasets/descr/wine_data.rst
${PYSITELIB}/sklearn/datasets/images/china.jpg
${PYSITELIB}/sklearn/datasets/images/flower.jpg
+${PYSITELIB}/sklearn/datasets/images/README.txt
${PYSITELIB}/sklearn/datasets/kddcup99.py
${PYSITELIB}/sklearn/datasets/kddcup99.pyc
${PYSITELIB}/sklearn/datasets/kddcup99.pyo
@@ -204,8 +206,8 @@ ${PYSITELIB}/sklearn/datasets/tests/__in
${PYSITELIB}/sklearn/datasets/tests/__init__.pyc
${PYSITELIB}/sklearn/datasets/tests/__init__.pyo
${PYSITELIB}/sklearn/datasets/tests/data/svmlight_classification.txt
-${PYSITELIB}/sklearn/datasets/tests/data/svmlight_invalid.txt
${PYSITELIB}/sklearn/datasets/tests/data/svmlight_invalid_order.txt
+${PYSITELIB}/sklearn/datasets/tests/data/svmlight_invalid.txt
${PYSITELIB}/sklearn/datasets/tests/data/svmlight_multilabel.txt
${PYSITELIB}/sklearn/datasets/tests/test_20news.py
${PYSITELIB}/sklearn/datasets/tests/test_20news.pyc
@@ -354,12 +356,12 @@ ${PYSITELIB}/sklearn/ensemble/tests/test
${PYSITELIB}/sklearn/ensemble/tests/test_forest.py
${PYSITELIB}/sklearn/ensemble/tests/test_forest.pyc
${PYSITELIB}/sklearn/ensemble/tests/test_forest.pyo
-${PYSITELIB}/sklearn/ensemble/tests/test_gradient_boosting.py
-${PYSITELIB}/sklearn/ensemble/tests/test_gradient_boosting.pyc
-${PYSITELIB}/sklearn/ensemble/tests/test_gradient_boosting.pyo
${PYSITELIB}/sklearn/ensemble/tests/test_gradient_boosting_loss_functions.py
${PYSITELIB}/sklearn/ensemble/tests/test_gradient_boosting_loss_functions.pyc
${PYSITELIB}/sklearn/ensemble/tests/test_gradient_boosting_loss_functions.pyo
+${PYSITELIB}/sklearn/ensemble/tests/test_gradient_boosting.py
+${PYSITELIB}/sklearn/ensemble/tests/test_gradient_boosting.pyc
+${PYSITELIB}/sklearn/ensemble/tests/test_gradient_boosting.pyo
${PYSITELIB}/sklearn/ensemble/tests/test_iforest.py
${PYSITELIB}/sklearn/ensemble/tests/test_iforest.pyc
${PYSITELIB}/sklearn/ensemble/tests/test_iforest.pyo
@@ -402,6 +404,9 @@ ${PYSITELIB}/sklearn/externals/joblib/_m
${PYSITELIB}/sklearn/externals/joblib/_parallel_backends.py
${PYSITELIB}/sklearn/externals/joblib/_parallel_backends.pyc
${PYSITELIB}/sklearn/externals/joblib/_parallel_backends.pyo
+${PYSITELIB}/sklearn/externals/joblib/backports.py
+${PYSITELIB}/sklearn/externals/joblib/backports.pyc
+${PYSITELIB}/sklearn/externals/joblib/backports.pyo
${PYSITELIB}/sklearn/externals/joblib/disk.py
${PYSITELIB}/sklearn/externals/joblib/disk.pyc
${PYSITELIB}/sklearn/externals/joblib/disk.pyo
@@ -423,27 +428,21 @@ ${PYSITELIB}/sklearn/externals/joblib/me
${PYSITELIB}/sklearn/externals/joblib/my_exceptions.py
${PYSITELIB}/sklearn/externals/joblib/my_exceptions.pyc
${PYSITELIB}/sklearn/externals/joblib/my_exceptions.pyo
-${PYSITELIB}/sklearn/externals/joblib/numpy_pickle.py
-${PYSITELIB}/sklearn/externals/joblib/numpy_pickle.pyc
-${PYSITELIB}/sklearn/externals/joblib/numpy_pickle.pyo
${PYSITELIB}/sklearn/externals/joblib/numpy_pickle_compat.py
${PYSITELIB}/sklearn/externals/joblib/numpy_pickle_compat.pyc
${PYSITELIB}/sklearn/externals/joblib/numpy_pickle_compat.pyo
${PYSITELIB}/sklearn/externals/joblib/numpy_pickle_utils.py
${PYSITELIB}/sklearn/externals/joblib/numpy_pickle_utils.pyc
${PYSITELIB}/sklearn/externals/joblib/numpy_pickle_utils.pyo
+${PYSITELIB}/sklearn/externals/joblib/numpy_pickle.py
+${PYSITELIB}/sklearn/externals/joblib/numpy_pickle.pyc
+${PYSITELIB}/sklearn/externals/joblib/numpy_pickle.pyo
${PYSITELIB}/sklearn/externals/joblib/parallel.py
${PYSITELIB}/sklearn/externals/joblib/parallel.pyc
${PYSITELIB}/sklearn/externals/joblib/parallel.pyo
${PYSITELIB}/sklearn/externals/joblib/pool.py
${PYSITELIB}/sklearn/externals/joblib/pool.pyc
${PYSITELIB}/sklearn/externals/joblib/pool.pyo
-${PYSITELIB}/sklearn/externals/joblib/testing.py
-${PYSITELIB}/sklearn/externals/joblib/testing.pyc
-${PYSITELIB}/sklearn/externals/joblib/testing.pyo
-${PYSITELIB}/sklearn/externals/odict.py
-${PYSITELIB}/sklearn/externals/odict.pyc
-${PYSITELIB}/sklearn/externals/odict.pyo
${PYSITELIB}/sklearn/externals/setup.py
${PYSITELIB}/sklearn/externals/setup.pyc
${PYSITELIB}/sklearn/externals/setup.pyo
@@ -583,9 +582,6 @@ ${PYSITELIB}/sklearn/kernel_approximatio
${PYSITELIB}/sklearn/kernel_ridge.py
${PYSITELIB}/sklearn/kernel_ridge.pyc
${PYSITELIB}/sklearn/kernel_ridge.pyo
-${PYSITELIB}/sklearn/lda.py
-${PYSITELIB}/sklearn/lda.pyc
-${PYSITELIB}/sklearn/lda.pyo
${PYSITELIB}/sklearn/learning_curve.py
${PYSITELIB}/sklearn/learning_curve.pyc
${PYSITELIB}/sklearn/learning_curve.pyo
@@ -629,10 +625,10 @@ ${PYSITELIB}/sklearn/linear_model/ransac
${PYSITELIB}/sklearn/linear_model/ridge.py
${PYSITELIB}/sklearn/linear_model/ridge.pyc
${PYSITELIB}/sklearn/linear_model/ridge.pyo
+${PYSITELIB}/sklearn/linear_model/sag_fast.so
${PYSITELIB}/sklearn/linear_model/sag.py
${PYSITELIB}/sklearn/linear_model/sag.pyc
${PYSITELIB}/sklearn/linear_model/sag.pyo
-${PYSITELIB}/sklearn/linear_model/sag_fast.so
${PYSITELIB}/sklearn/linear_model/setup.py
${PYSITELIB}/sklearn/linear_model/setup.pyc
${PYSITELIB}/sklearn/linear_model/setup.pyo
@@ -772,10 +768,10 @@ ${PYSITELIB}/sklearn/metrics/cluster/tes
${PYSITELIB}/sklearn/metrics/cluster/unsupervised.py
${PYSITELIB}/sklearn/metrics/cluster/unsupervised.pyc
${PYSITELIB}/sklearn/metrics/cluster/unsupervised.pyo
+${PYSITELIB}/sklearn/metrics/pairwise_fast.so
${PYSITELIB}/sklearn/metrics/pairwise.py
${PYSITELIB}/sklearn/metrics/pairwise.pyc
${PYSITELIB}/sklearn/metrics/pairwise.pyo
-${PYSITELIB}/sklearn/metrics/pairwise_fast.so
${PYSITELIB}/sklearn/metrics/ranking.py
${PYSITELIB}/sklearn/metrics/ranking.pyc
${PYSITELIB}/sklearn/metrics/ranking.pyo
@@ -899,9 +895,13 @@ ${PYSITELIB}/sklearn/neighbors/kd_tree.s
${PYSITELIB}/sklearn/neighbors/kde.py
${PYSITELIB}/sklearn/neighbors/kde.pyc
${PYSITELIB}/sklearn/neighbors/kde.pyo
+${PYSITELIB}/sklearn/neighbors/lof.py
+${PYSITELIB}/sklearn/neighbors/lof.pyc
+${PYSITELIB}/sklearn/neighbors/lof.pyo
${PYSITELIB}/sklearn/neighbors/nearest_centroid.py
${PYSITELIB}/sklearn/neighbors/nearest_centroid.pyc
${PYSITELIB}/sklearn/neighbors/nearest_centroid.pyo
+${PYSITELIB}/sklearn/neighbors/quad_tree.so
${PYSITELIB}/sklearn/neighbors/regression.py
${PYSITELIB}/sklearn/neighbors/regression.pyc
${PYSITELIB}/sklearn/neighbors/regression.pyo
@@ -926,12 +926,18 @@ ${PYSITELIB}/sklearn/neighbors/tests/tes
${PYSITELIB}/sklearn/neighbors/tests/test_kde.py
${PYSITELIB}/sklearn/neighbors/tests/test_kde.pyc
${PYSITELIB}/sklearn/neighbors/tests/test_kde.pyo
+${PYSITELIB}/sklearn/neighbors/tests/test_lof.py
+${PYSITELIB}/sklearn/neighbors/tests/test_lof.pyc
+${PYSITELIB}/sklearn/neighbors/tests/test_lof.pyo
${PYSITELIB}/sklearn/neighbors/tests/test_nearest_centroid.py
${PYSITELIB}/sklearn/neighbors/tests/test_nearest_centroid.pyc
${PYSITELIB}/sklearn/neighbors/tests/test_nearest_centroid.pyo
${PYSITELIB}/sklearn/neighbors/tests/test_neighbors.py
${PYSITELIB}/sklearn/neighbors/tests/test_neighbors.pyc
${PYSITELIB}/sklearn/neighbors/tests/test_neighbors.pyo
+${PYSITELIB}/sklearn/neighbors/tests/test_quad_tree.py
+${PYSITELIB}/sklearn/neighbors/tests/test_quad_tree.pyc
+${PYSITELIB}/sklearn/neighbors/tests/test_quad_tree.pyo
${PYSITELIB}/sklearn/neighbors/typedefs.so
${PYSITELIB}/sklearn/neighbors/unsupervised.py
${PYSITELIB}/sklearn/neighbors/unsupervised.pyc
@@ -996,9 +1002,6 @@ ${PYSITELIB}/sklearn/preprocessing/tests
${PYSITELIB}/sklearn/preprocessing/tests/test_label.py
${PYSITELIB}/sklearn/preprocessing/tests/test_label.pyc
${PYSITELIB}/sklearn/preprocessing/tests/test_label.pyo
-${PYSITELIB}/sklearn/qda.py
-${PYSITELIB}/sklearn/qda.pyc
-${PYSITELIB}/sklearn/qda.pyo
${PYSITELIB}/sklearn/random_projection.py
${PYSITELIB}/sklearn/random_projection.pyc
${PYSITELIB}/sklearn/random_projection.pyo
@@ -1030,8 +1033,8 @@ ${PYSITELIB}/sklearn/svm/classes.py
${PYSITELIB}/sklearn/svm/classes.pyc
${PYSITELIB}/sklearn/svm/classes.pyo
${PYSITELIB}/sklearn/svm/liblinear.so
-${PYSITELIB}/sklearn/svm/libsvm.so
${PYSITELIB}/sklearn/svm/libsvm_sparse.so
+${PYSITELIB}/sklearn/svm/libsvm.so
${PYSITELIB}/sklearn/svm/setup.py
${PYSITELIB}/sklearn/svm/setup.pyc
${PYSITELIB}/sklearn/svm/setup.pyo
@@ -1062,12 +1065,18 @@ ${PYSITELIB}/sklearn/tests/test_check_bu
${PYSITELIB}/sklearn/tests/test_common.py
${PYSITELIB}/sklearn/tests/test_common.pyc
${PYSITELIB}/sklearn/tests/test_common.pyo
+${PYSITELIB}/sklearn/tests/test_config.py
+${PYSITELIB}/sklearn/tests/test_config.pyc
+${PYSITELIB}/sklearn/tests/test_config.pyo
${PYSITELIB}/sklearn/tests/test_cross_validation.py
${PYSITELIB}/sklearn/tests/test_cross_validation.pyc
${PYSITELIB}/sklearn/tests/test_cross_validation.pyo
${PYSITELIB}/sklearn/tests/test_discriminant_analysis.py
${PYSITELIB}/sklearn/tests/test_discriminant_analysis.pyc
${PYSITELIB}/sklearn/tests/test_discriminant_analysis.pyo
+${PYSITELIB}/sklearn/tests/test_docstring_parameters.py
+${PYSITELIB}/sklearn/tests/test_docstring_parameters.pyc
+${PYSITELIB}/sklearn/tests/test_docstring_parameters.pyo
${PYSITELIB}/sklearn/tests/test_dummy.py
${PYSITELIB}/sklearn/tests/test_dummy.pyc
${PYSITELIB}/sklearn/tests/test_dummy.pyo
@@ -1163,10 +1172,10 @@ ${PYSITELIB}/sklearn/utils/fast_dict.so
${PYSITELIB}/sklearn/utils/fixes.py
${PYSITELIB}/sklearn/utils/fixes.pyc
${PYSITELIB}/sklearn/utils/fixes.pyo
+${PYSITELIB}/sklearn/utils/graph_shortest_path.so
${PYSITELIB}/sklearn/utils/graph.py
${PYSITELIB}/sklearn/utils/graph.pyc
${PYSITELIB}/sklearn/utils/graph.pyo
-${PYSITELIB}/sklearn/utils/graph_shortest_path.so
${PYSITELIB}/sklearn/utils/lgamma.so
${PYSITELIB}/sklearn/utils/linear_assignment_.py
${PYSITELIB}/sklearn/utils/linear_assignment_.pyc
@@ -1191,27 +1200,19 @@ ${PYSITELIB}/sklearn/utils/seq_dataset.s
${PYSITELIB}/sklearn/utils/setup.py
${PYSITELIB}/sklearn/utils/setup.pyc
${PYSITELIB}/sklearn/utils/setup.pyo
+${PYSITELIB}/sklearn/utils/sparsefuncs_fast.so
${PYSITELIB}/sklearn/utils/sparsefuncs.py
${PYSITELIB}/sklearn/utils/sparsefuncs.pyc
${PYSITELIB}/sklearn/utils/sparsefuncs.pyo
-${PYSITELIB}/sklearn/utils/sparsefuncs_fast.so
${PYSITELIB}/sklearn/utils/sparsetools/__init__.py
${PYSITELIB}/sklearn/utils/sparsetools/__init__.pyc
${PYSITELIB}/sklearn/utils/sparsetools/__init__.pyo
-${PYSITELIB}/sklearn/utils/sparsetools/_graph_tools.so
-${PYSITELIB}/sklearn/utils/sparsetools/_graph_validation.py
-${PYSITELIB}/sklearn/utils/sparsetools/_graph_validation.pyc
-${PYSITELIB}/sklearn/utils/sparsetools/_graph_validation.pyo
-${PYSITELIB}/sklearn/utils/sparsetools/_traversal.so
${PYSITELIB}/sklearn/utils/sparsetools/setup.py
${PYSITELIB}/sklearn/utils/sparsetools/setup.pyc
${PYSITELIB}/sklearn/utils/sparsetools/setup.pyo
${PYSITELIB}/sklearn/utils/sparsetools/tests/__init__.py
${PYSITELIB}/sklearn/utils/sparsetools/tests/__init__.pyc
${PYSITELIB}/sklearn/utils/sparsetools/tests/__init__.pyo
-${PYSITELIB}/sklearn/utils/sparsetools/tests/test_traversal.py
-${PYSITELIB}/sklearn/utils/sparsetools/tests/test_traversal.pyc
-${PYSITELIB}/sklearn/utils/sparsetools/tests/test_traversal.pyo
${PYSITELIB}/sklearn/utils/stats.py
${PYSITELIB}/sklearn/utils/stats.pyc
${PYSITELIB}/sklearn/utils/stats.pyo
@@ -1227,6 +1228,9 @@ ${PYSITELIB}/sklearn/utils/tests/test_be
${PYSITELIB}/sklearn/utils/tests/test_class_weight.py
${PYSITELIB}/sklearn/utils/tests/test_class_weight.pyc
${PYSITELIB}/sklearn/utils/tests/test_class_weight.pyo
+${PYSITELIB}/sklearn/utils/tests/test_deprecation.py
+${PYSITELIB}/sklearn/utils/tests/test_deprecation.pyc
+${PYSITELIB}/sklearn/utils/tests/test_deprecation.pyo
${PYSITELIB}/sklearn/utils/tests/test_estimator_checks.py
${PYSITELIB}/sklearn/utils/tests/test_estimator_checks.pyc
${PYSITELIB}/sklearn/utils/tests/test_estimator_checks.pyo
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