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CVS commit: pkgsrc/parallel/sge
Module Name: pkgsrc
Committed By: ahoka
Date: Mon Sep 15 16:30:57 UTC 2008
Modified Files:
pkgsrc/parallel/sge: Makefile PLIST distinfo
pkgsrc/parallel/sge/patches: patch-ah patch-ai patch-ak patch-am
patch-bl
Added Files:
pkgsrc/parallel/sge/patches: patch-bd patch-bm
Log Message:
Bugs fixed in SGE 6.1u3 since release 6.1u2
-------------------------------------------
Issue Sun BugId Description
-------- ---------
------------------------------------------------------------------------------------------
376 4743006 problem with floating point job resource limits
1909 6353628 information provided by qstat -j and qstat -j -xml are not
equivalent
2076 6440408 qstat -j messages disagree between plain, XML output
2077 6440412 qstat -j -xml messages incomplete
2138 6506667 forbid deletion of global config values
2194 6527836 authuser binary returns unusable error message!
2249 6568575 SGE does not work if primary group entry is too big in
groups map
2270 6575720 ENABLE_ADDGRP_KILL is missing from sge_conf(5)
2272 6575727 sge_shadowd(8) man page is missing some env vars
2274 6564461 Duplicate scheduling info messages for reservation jobs
2276 6575731 share_tree(5) doesn't explain type field
2283 6565821 Oracle, Postgres DWB should prompt for tablespace where
indexes and tables should be created
2293 6569088 Resource reservation broken for sequential jobs depending on
RQS specified for subset of queues only
2303 6571749 parallel resource reservation broken when non-queue instance
based quotas limits apply
2323 6576153 Creating a userset with NONE as a type results in a core dump
2327 6578213 qconf -(A,D,M,R)attr dumps core when the supplied file is
empty
2328 6579232 high scheduler dispatching time with many sequential
resource reservation jobs and resource quotas
2336 6287501 rctemplates lack of requirement
2338 6585721 Parallel RR broken if jobs wait for queue slots and no RQS
configured
2342 6590010 Original primary group vanishes after newgrp command
(USE_QSUB_GID=true)
2344 6590079 Resource reservation broken with sequences of identical jobs
differing only in their -R y|n
2346 6604155 qmon binary job submit is broken
2351 6597463 qsub -t 1-N:N creates a normal job with one task
2352 6594665 Installation fails on Linux with glibc 2.6
2353 6597423 commit method of UnixLoginModule does not report
RuntimeExceptions
2356 6600619 Userset spooling in classic mode is broken
2367 6597547 qdel does not recognize wc_job_range_list as it is defined
2369 6577034 Several qconf options display only single message when a
list of messages should be printed
2372 6469494 clients should issue a more explicit error message when
qmaster is busy
2374 6589459 Expose the availability of keyword "none" in the manual page
of calendar_conf
2382 6569862 Unset old_value out of the scope
2383 6553062 qconf -mc accepts erroneous resource entries without an
urgency; qmon gives (poor) error message
2387 6614041 Multiple occurrence of a name in RQS limit definition break
classic spooling
2392 6614108 Specifying more than one drmaa_v_env attribute causes
spurious error msg
2394 6608259 scheduler prints empty line in messages file after every
'sge_mirror' logging
2396 6608236 scheduling of parallel jobs does not respect consumables, if
consumable is referenced in rqs
2400 6564543 sge_shepherd should exit if it cannot write to any of its
essential files
2401 6617450 add option to reporting_params for switching off writing of
consumables
2404 6618328 qmon displays wrong string for queue filtering
2406 6596931 Incorrect messages in qconf command
2407 6618619 the restore feature does not delete old configuration before
restoring
2409 6619016 removing parameters from the reporting_params will not
fallback to the default
2410 6619657 qmod -e|-d '*' times out in large clusters
2411 6619662 qhost becomes sluggish in large clusters
2414 6618599 Long running jobs cause incorrect usage summary for ARCo
database
2415 6620930 ARCO view_accounting filters out parallel job usage
incorrectly
2416 6621482 ju_exit_status should provide means to recognize the
intermediate record
2417 6622842 the start_time field in intermediate accounting records is
incorrect
2418 6588743 qrsh fails with "connection refused" error message
2419 6391244 qstat -ext reports wrong usage as compared to other commands
such as qstat -t or qstat -j
2424 6620253 During the installation the admin user should create web.xml
file
2428 6630268 upgrade from 6.0u2 and higher to 6.1u2 and higher does not
work
2435 6599335 inst_sge help output for -upd switch is incorrect
Bugs fixed in SGE 6.1u2 since release 6.1u1
-------------------------------------------
Issue Sun BugId Description
-------- ---------
------------------------------------------------------------------------------------------
- 6590960 Man pages show the wrong version number
2345 6590574 resource quota can prevent dispatching of jobs that requests
no resource in this quota
2343 6589807 newline missing from "illegal debug level format" message
2338 6585721 Parallel RR broken if jobs wait for queue slots and no RQS
configured
2334 6584632 user/system/operator hold state combinations cause strange
qstat output
Bugs fixed in SGE 6.1u1 since release 6.1
-----------------------------------------
Issue Sun BugId Description
-------- ---------
------------------------------------------------------------------------------------------
2323 6576153 Creating a userset with NONE as a type results in a core dump
2317 6574565 Oralce, Postgres FOREIGN KEY fields need to be indexed
- 6573980 'qconf -help' suggests usage of patterns in user_list which
is not true
2316 6573508 qrsh with ssh causes job to go in error state when Ctrl-C is
pressed
2308 6572803 qhost -xml lacks '>' with initial qhost tag
2309 6572801 sge_queue_values definition does not contain PRIMARY KEY
2321 6571714 Inadequate error message when qconf -sstree is run when no
share tree is configuredIf no share tree
2241 6568712 util/arch has problem recognizing libc version number with
comma
2292 6568578 6.1 upgrade procedure shall exit when there are jobs in the
cluster
2249 6568575 SGE does not work if primary group entry is too big in
groups map
2284 6565841 Oracle: rollback segments keep filling up, Postgres: delete
query keeps running
2306 6564592 SGE 6.1 upgrade procedure is broken when using the classic
qmaster spooling
2275 6564503 sge_schedd deadlock upon schedd_job_info job_list being
enabled
2250 6558006 qmaster may crash with projects or usersets used in RQS
2243 6555744 qmon crashes when displaying about dialog
2248 6554313 add -u <user> to scheduler category only if there is a
resource quota for the user
2238 6551568 need faster resource quota matchmaking and more concise job
info messages
- 6550718 qstat -j lacks resource quota info messages in case of
"incomplete" resource quotas
2296 6548455 csp mode installation, using /etc/services, qmaster is not
starting!
2232 6546807 qhost -j -xml does not work
2325 6542987 drmaa_run_job(3) raises error if drmaa_native_specification
has leading spaces
2239 6542137 use of hostgroups in resource quotas is less performant than
the full list of hosts
- 6541085 NFS write error on N1GE trace file
2300 6539199 qquota(1) filtering broken for project and pe if -P/-pe
switch is not used
2299 6536039 sgeremoterun not working
2201 6529974 Use of MORE fails on some architectures
- 6528949 inst_sge -ux uninstallation of exechost tries to delete
local spooldir, even it isn't configured!
2191 6525883 qstat -s hX filtering is broken on darwin
2189 6525375 qacct ignores jobs in output
2320 6513115 in qmon, under calendar configuration, it is possible to
modify even if no calendar exists
2326 6506661 sge_conf(5), description for rlogin_daemon and qlogin_daemon
is wrong
2307 6433628 qconf -sq all.q@myhost produces no value at all for
complex_values (not even NONE)
2289 6565951 Qmon panel does not check for valid data in Scheduler
Configuration
2314 6513116 Qmon x qconf inconsistent in allowed characters in attribute
names
- 6195248 QMON Job Control Window: Incomprehensible Priority Button
2313 6410592 Double clicking in Consumables/Fixed Attributes list does
not behave as a GUI should
2312 6482211 complex attributes whose deletion is denied donot reflect
back after the denial message in qmon
2301 6551121 Memory leak in libdrmaa.so
916 6355875 qsub -terse to just output job id
- 6522273 Wrong exit code with qconf -sds
2266 6563346 Wrong usage of 'day' format model in trunc(date) Oracle
functions
2187 6562190 memory leak in sge_schedd
2265 6280747 qmon loses sharetree changes
747 6291044 "Modify"-Button is activated but should be grayed
2263 6553066 qmon's Complex Configuration Load and Save buttons did not
work
2262 4742097 Qmon has a ticket number limitation
1729 4818801 qmon on secondary screen crashes when "Job Control" is
pressed
2261 6538740 clear usage operation should implicitely trigger refresh in
share-tree dialogue
2260 6327539 Ability to sort queue instances using each column of the
queue instances table
2229 6544869 UNKNOWN group/owner in accouting(5)
2247 6556411 DBW queries "Average Job Turnaround Time", "Average Job Wait
Time" might not work
- 6481737 Arco should support webconsole 3.0.x
- 6559385 Calling JGDI getQueueInstanceSummary results in a memory leak
1813 6328064 Queue request -q from sge_request can't be overridden
through command line
- 6355674 arcorun can not be used as sge_admin user if the toc file is
not available
2164 6514085 Need a possibility to update existing example queries for
the ARCo web application
- 6426331 remove util/sge_log_tee from distribution
- 6476263 function job_get_id_string() is not MT save and used in
qmaster
2219 6536426 inst_sge -m fails for non-root when USER variable is not set
1860 6345522 qdel on a job in deleted state does not output any
information
2258 5081743 queue status in reporting file is missing.
2050 6422335 still used usersets/project/calendar/pe/checkpoint can be
removed under certain conditions
Bugs fixed in SGE 6.1 since release 6.1_beta
--------------------------------------------
Issue Sun BugId Description
-------- ---------
------------------------------------------------------------------------------------------
1941 5086007 qstat -qs doesn't work
2183 6499217 meaningless error in clients when reporting_param flush_time
is incorrectly set
- 6525497 JGDI crashes JVM when null is passed to JNI
GetStringUTFChars function
2220 6440226 add installation of SGE_Helper_Service to auto installation
2221 6521802 the binary check in inst_sge is wrong!
- 6537633 Extraneous space in qsub's "Invalid month specification."
message
2222 6538293 Hybrid user/project share-tree is broken for user sharing
amongst array jobs
2180 6518684 Qconf usage x man page inconsistency
2181 6518689 Project man page contains different attribute names.
2171 6516288 Scheduler does not write pid file in daemonize phase
2178 6518607 invalid memory access in cl_com_get_handle
- 6520761 add background mode to N1 Grid Engine Helper Service
- 6233523 loadcheck reports on a hyperthreaded CPU only one processor
- 6276612 provide support for Itanium platform
752 6288953 scalability issue with qdel and very large array jobs
751 6291047 qconf -sstnode cannot find root
- 6303750 Install guide ambiguous on role of CSP
1930 6329378 incorrect qsub error message, if an invalid integer value is
passed to the -l option
1858 6344960 qtcsh behaves differently in direct mode from qrshmode
1933 6349037 "qstat -explain E" displays explanation of the same error
two times.
1940 6362523 qstat -q filter does compare hosts in queue instances
- 6363245 on some Windows execution hosts, execd hangs after the job
has finished
1978 6383256 no newline at end of sge_shepherd's exit_status messages
- 6395078 wrong entry in sgepasswd file wrongly sets whole host in
error state
2012 6402127 qconf -suserl reports incorrect status if no users are
defined
- 6403152 qconf -as returns error code 0 even in case of unresolvable
host
2015 6403810 JavaDocs for DRMAA need improvement
- 6428621 add a reserved complex value to control displaying Windows
GUIs
- 6453426 Event clients will not get list updates, when they change
their subscription after the registration
- 6461308 Wrong path to spooled parallel jobs with using classic
spooling
2130 6501447 No online usage for MacOS X
2141 6506701 sge_shepherd dumps core on linux amd64 for qrsh jobs with
very long cmdline (> 10k)
2233 6528950 modifying a RQS with invalid syntax results in its deletion
- 6533952 Admins guide does not mention that parallel environments
must be linked with queues
- 6535768 Upgrade chapter 5 in 6.1 install guide must mention
abolition of LD_LIBRARY_PATH for Solaris/Linux
- 6535775 Upgrade chapter in 6.1 Install Guide wrongly indicates
upgrade from 5.3 were possible
- 6537476 6.1 install guide broken and incomplete wrts MySQL
installation for ARCO
- 6537607 6.1 Admins guide needs improvement on the linking between
queues and parallel environments
- 6539215 quota verification time may not grow with the number of
queues
2224 6539792 resource quotas broken after qmaster restart
- 6542483 Important changes with Resource Quota chapter in 6.1 admins
guide
- 6545277 sge_statistic tables are not documented
2230 6546370 Pivot for ARCo Accounting Queries does not show all the
fields
2231 6546802 qstat -F -xml does not show resources
Bugs fixed in SGE 6.1_beta since release 6.1_preview2
-----------------------------------------------------
Issue Sun BugId Description
-------- ---------
------------------------------------------------------------------------------------------
- 6267190 Typo before "About the urgent priority" in Admin Guide
1445 6291021 64 bit solaris BDB rpc server broken
1703 6295319 Admin guide: refers to sge_host(5) instead of host_conf(5)
- 6344917 Error in Embedded Command Line Options example
- 6395075 on Windows, execd doesn't provide useful error messages when
SSL keys broken
2188 6421113 CSP mode auto installation: certificates are not copied to
submit hosts
- 6444526 Admin guide describes N1GE backup facility, but restore is
not described
2196 6472614 Auto installation option failed to save the install log
2182 6513433 remote installation of execd's need enhancement, rework,
cleanup
2139 6506690 dbwriter should not use autocommit mode
- 6520257 need to define continuation character behaviour with qconf
file formats
- 6521285 describe useful characters for every parameter
2185 6522385 qmon crash in cluster configuration dialog when modifying a
host
2192 6525917 qacct -l h=<hostname> dumps core on darwin and linux itanium
2198 6528808 sge_ca script fails on nfs no root access file systems
2202 6530335 qmaster aborts when a resource quota set is modified while
jobs are running
2204 6531317 qstat -xml does not show pending/zombie jobs
2206 6531921 qstat -r -xml is not working
2207 6533754 resource quota are modified on qconf -mrqs, even if the
editor is exited without saving
Bugs fixed in SGE 6.1_preview2 since release 6.1_preview1
---------------------------------------------------------
Issue Sun BugId Description
-------- ---------
------------------------------------------------------------------------------------------
- 5093930 ARCo should work with MySQL
- 5101053 Regular expressions should also be mentioned in qsub in
addition to complex
- 5101735 Needs more boolean operators support for resource requests
56 6205203 Logical OR operator works only with complex attributes of
type RESTRING
2135 6506115 Invalid qconf -mattr crashes qmaster
2150 6507572 qconf -Arqs added invalid RQS
2146 6510635 Default requests for complexes not honored by resource quotas
2161 6513944 qmaster core dump with usersets referenced in RQS
2162 6513967 unix groups are not considered by RQS
2166 6515122 add -wd working_dir in addition to -cwd option for submission
To generate a diff of this commit:
cvs rdiff -r1.31 -r1.32 pkgsrc/parallel/sge/Makefile
cvs rdiff -r1.3 -r1.4 pkgsrc/parallel/sge/PLIST
cvs rdiff -r1.8 -r1.9 pkgsrc/parallel/sge/distinfo
cvs rdiff -r1.3 -r1.4 pkgsrc/parallel/sge/patches/patch-ah \
pkgsrc/parallel/sge/patches/patch-ai pkgsrc/parallel/sge/patches/patch-am
cvs rdiff -r1.4 -r1.5 pkgsrc/parallel/sge/patches/patch-ak
cvs rdiff -r0 -r1.3 pkgsrc/parallel/sge/patches/patch-bd
cvs rdiff -r1.2 -r1.3 pkgsrc/parallel/sge/patches/patch-bl
cvs rdiff -r0 -r1.1 pkgsrc/parallel/sge/patches/patch-bm
Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.
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