Subject: CVS commit: pkgsrc/biology/hmmer
To: None <>
From: Min Sik Kim <>
List: pkgsrc-changes
Date: 12/01/2004 04:01:09
Module Name:	pkgsrc
Committed By:	minskim
Date:		Wed Dec  1 04:01:09 UTC 2004

Modified Files:
	pkgsrc/biology/hmmer: Makefile distinfo

Log Message:
Update hmmer to 2.3.2.  Patch provided by David Price in PR pkg/28483.
While here, enable pkgviews installation.

-:- hmmsearch intermittently failed on Swissprot searches, on some
    platforms (reports on AMD/Linux; Mac OS/X). (#h25)
-:- hmmpfam memory allocation strategy did not guarantee RAMLIMIT,
    and could explode to very large allocations when searching
    with large sequences. (#h26)
-:- technical improvements in handing dsq's (digitized sequences);
    "bug" has no visible effects, except when compiling on
    different platforms. (#h27)
-:- typo fix in P7Forward() recursion; typo may have had minor
    effect on calculated scores. (#h28)
-:- hmmalign now includes --outformat and --oneline option for
    specifying different output alignment formats than the default

To generate a diff of this commit:
cvs rdiff -r1.5 -r1.6 pkgsrc/biology/hmmer/Makefile
cvs rdiff -r1.3 -r1.4 pkgsrc/biology/hmmer/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.