[pkgsrc/trunk]: pkgsrc/biology/rna-seq biology/rna-seq: Core tools needed for...

[bacon <bacon%pkgsrc.org@localhost>]

details:   https://anonhg.NetBSD.org/pkgsrc/rev/e834be019c9b
branches:  trunk
changeset: 389923:e834be019c9b
user:      bacon <bacon%pkgsrc.org@localhost>
date:      Mon Dec 12 18:39:36 2022 +0000

description:
biology/rna-seq: Core tools needed for RNA-Seq analysis

The rna-seq meta-package provides the core tools needed for performing
a typical RNA-Seq differential gene expression analysis, including
adapter trimming, quality control, alignment, and identification of
differentially expressed genes.  Researchers may want additional tools
for data manipulation, gene ontology, etc.

diffstat:

 biology/rna-seq/DESCR    |   5 +++++
 biology/rna-seq/Makefile |  23 +++++++++++++++++++++++
 2 files changed, 28 insertions(+), 0 deletions(-)

diffs (36 lines):

diff -r d16d78b8bb1c -r e834be019c9b biology/rna-seq/DESCR
--- /dev/null   Thu Jan 01 00:00:00 1970 +0000
+++ b/biology/rna-seq/DESCR     Mon Dec 12 18:39:36 2022 +0000
@@ -0,0 +1,5 @@
+The rna-seq meta-package provides the core tools needed for performing
+a typical RNA-Seq differential gene expression analysis, including
+adapter trimming, quality control, alignment, and identification of
+differentially expressed genes.  Researchers may want additional tools
+for data manipulation, gene ontology, etc.
diff -r d16d78b8bb1c -r e834be019c9b biology/rna-seq/Makefile
--- /dev/null   Thu Jan 01 00:00:00 1970 +0000
+++ b/biology/rna-seq/Makefile  Mon Dec 12 18:39:36 2022 +0000
@@ -0,0 +1,23 @@
+# $NetBSD: Makefile,v 1.1 2022/12/12 18:39:36 bacon Exp $
+#
+
+DISTNAME=      rna-seq-1.0
+CATEGORIES=    biology meta-pkgs
+MASTER_SITES=  # empty
+
+MAINTAINER=    bacon%NetBSD.org@localhost
+COMMENT=       Core tools needed for RNA-Seq analysis
+
+DEPENDS+=      fastq-trim>=0:../../biology/fastq-trim
+DEPENDS+=      fastqc>=0:../../biology/fastqc
+DEPENDS+=      biolibc-tools>=0:../../biology/biolibc-tools
+DEPENDS+=      gffread>=0:../../biology/gffread
+DEPENDS+=      kallisto>=0:../../biology/kallisto
+DEPENDS+=      hisat2>=0:../../biology/hisat2
+DEPENDS+=      samtools>=0:../../biology/samtools
+DEPENDS+=      igv>=0:../../biology/igv
+DEPENDS+=      fasda>=0:../../biology/fasda
+
+META_PACKAGE=  yes
+
+.include "../../mk/bsd.pkg.mk"