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[pkgsrc/trunk]: pkgsrc/math/R-XML Update to 3.98.1.1
details: https://anonhg.NetBSD.org/pkgsrc/rev/6f157d4a35f4
branches: trunk
changeset: 621333:6f157d4a35f4
user: wen <wen%pkgsrc.org@localhost>
date: Sun Jul 07 14:21:58 2013 +0000
description:
Update to 3.98.1.1
Upstream changes:
Version 3.98-1
* Compilation error with clang. Simple declaration of a routine.
Version 3.98-0
* Update for libxml2-2.9.1 and reading from a connection for xmlEventParse().
* xmlIncludes() is a hierarchical version of getXIncludes()
* Modifications to xmlSource(), e.g. verbose = TRUE as default.
Version 3.97-0
* Fix for xmlValue(node) = text. Identified by Lawrence Edwards.
Uses xmlNodeSetContent() now and leaves freeing the original content to that routine.
* Updates for xmlSource()
Version 3.96-1
* readHTMLTable() ignores headers that are over 999 characters.
* Fix a problem in readHTMLTable() with some table headers not having
the correct number of elements to match the columns.
Version 3.96-0
* Introduced readHTMLList(), getHTMLLinks(), getHTMLExternalFiles(), getXIncludes().
* When serializing XMLNode objects, i.e. R representations of nodes, ensure " and <, etc. in attributes
are serialized correctly.
Version 3.95-1
* Allow htmlParse(), xmlParse(), etc. ?
Version 3.95-0
* Moved development version of the source code for the package to github -
https://github.com/omegahat/XML.git
* Changes to the structure of the package to allow installation directly rather than
via a one-step staging into the R package structure.
* Sample XML documents moved from data/ to exampleData, and examples updated.
* getDefaultNamespace() and matchNamespaces() use simplify = TRUE to call
xmlNamespaceDefinitions() to get the namespaces as a character vector rather than
list.
* Documentation updates
Version 3.94-0
* getNodeLocation() now reports the actual line number for text nodes rather than 0,
using the sibling nodes' or parent node's line number.
* xpathApply() and related functions work with builtin type "functions",
e.g. class.
* xpathApply() and related functions (getNodeSet, xpathSApply) allow
the caller to specify multiple queries as a character vector
and these are pasted together as compound location paths by
separating them with a '|'. This makes it easier for the
caller to manage the different queries.
* assigning to a child of a node works, e.g. node[["abc"]] = text/node
and node[[index]] = text/node. We replace a matching name. If the
replacement value is text, we use the name to
* getChildrenStrings() is a function that implements the equivalent of
xmlApply(node, xmlValue) but faster because we avoid the function call
for each element.
* options parameter for xmlParse() and htmlParse() for controlling the parser.
(Currently only used when encoding is explicitly specified.)
* encoding parameter for xmlParse() and xmlTreeParse() now works for XML documents,
not just HTML documents.
* Update for readHTMLTable() method so that we look at just the final <tr> node
in a <thead>.
Version 3.93-1
* Fixed bug in findXInclude() that sometimes got the wrong XMLXIncludeStartNode.
Hence getNodeLocation() might report the wrong file, but correct line number!
* findXInclude() now has a recursive parameter that resolves the chain of XIncludes.
This returns the full path to the file, relative to the base/top-level document,
not just the parent document.
* Change to the default value of the error parameter in htmlParse() and htmlTreeParse()
which will generate a structured R error if there is an IO error.
The set of issues that will raise an error will be broadened in the future.
Version 3.93-0
* Enabled the fixing of <dummy> namespaces by finding the definition o
for that prefix in the ancestor nodes.
Version 3.92-2
* Synchronized compilation flags for Windows with those on OSX & Linux.
Version 3.92-1
* Restore original error handler function for htmlParse() and htmlTreeParse()
* Fixed a reference counting problem caused by not adding a finalizer in the
as() method for coercing an XMLInternalNode to an XMLInternalDocument.
Example from Janko Thyson.
* Fixed up some partial argument names found by R CMD check!
Version 3.92-0
* Added --enable-xml-debug option for the configure script and this activates
the debugging diagnostic reporting, mainly for the garbage collection and node
reference counts.
* Work-around for HTML documents not being freed (but XML documents are!)
* Added an isHTML parameter for xmlTreeParse.
* Merge htmlTreeParse/htmlParse with xmlTreeParse.
* Implemented some diagnostic facilities to determine if an external pointer
is in R's weak references list. This needs support within R. (Ask for code if
you want.)
Version 3.91-0
* Start of implementation to allow nested calls to newXMLNode() to use namespace prefixes
defined in ancestor nodes. Disabled at present.
diffstat:
math/R-XML/Makefile | 4 ++--
math/R-XML/distinfo | 10 ++++------
math/R-XML/patches/patch-configure | 13 -------------
math/R-XML/patches/patch-configure.in | 13 -------------
4 files changed, 6 insertions(+), 34 deletions(-)
diffs (67 lines):
diff -r 64248cf9eb67 -r 6f157d4a35f4 math/R-XML/Makefile
--- a/math/R-XML/Makefile Sun Jul 07 13:38:23 2013 +0000
+++ b/math/R-XML/Makefile Sun Jul 07 14:21:58 2013 +0000
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.3 2012/06/14 07:45:23 sbd Exp $
+# $NetBSD: Makefile,v 1.4 2013/07/07 14:21:58 wen Exp $
PKGREVISION= 1
CATEGORIES= math
@@ -10,7 +10,7 @@
LICENSE= 2-clause-bsd
R_PKGNAME= XML
-R_PKGVER= 3.9-4
+R_PKGVER= 3.98-1.1
.include "../../math/R/Makefile.extension"
.include "../../textproc/libxml2/buildlink3.mk"
diff -r 64248cf9eb67 -r 6f157d4a35f4 math/R-XML/distinfo
--- a/math/R-XML/distinfo Sun Jul 07 13:38:23 2013 +0000
+++ b/math/R-XML/distinfo Sun Jul 07 14:21:58 2013 +0000
@@ -1,7 +1,5 @@
-$NetBSD: distinfo,v 1.3 2013/06/13 14:27:50 joerg Exp $
+$NetBSD: distinfo,v 1.4 2013/07/07 14:21:58 wen Exp $
-SHA1 (R/XML_3.9-4.tar.gz) = 36fbbd8df0abd6c7fdeb5f606e89f6171a2c4399
-RMD160 (R/XML_3.9-4.tar.gz) = 7f5ad42eea9f790e34ffe72cc12b7b5020882148
-Size (R/XML_3.9-4.tar.gz) = 923501 bytes
-SHA1 (patch-configure) = 594acfce620f3f3852c529924f9903088d0c6ba8
-SHA1 (patch-configure.in) = cf1d85bc75c194071e95c5c6a7530b8869d18e61
+SHA1 (R/XML_3.98-1.1.tar.gz) = a7dd9d9ed8b096150c457b76c4e3d795994f57b6
+RMD160 (R/XML_3.98-1.1.tar.gz) = 29f5e55c004df89e764fda007130d1e5171a42a6
+Size (R/XML_3.98-1.1.tar.gz) = 1582216 bytes
diff -r 64248cf9eb67 -r 6f157d4a35f4 math/R-XML/patches/patch-configure
--- a/math/R-XML/patches/patch-configure Sun Jul 07 13:38:23 2013 +0000
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,13 +0,0 @@
-$NetBSD: patch-configure,v 1.1 2013/06/13 14:27:50 joerg Exp $
-
---- configure.orig 2013-06-13 11:00:58.000000000 +0000
-+++ configure
-@@ -4541,7 +4541,7 @@ cat >>conftest.$ac_ext <<_ACEOF
- #include <libxml/parser.h>
- #endif
- int
--main(int argc, char *argv)
-+main(int argc, char **argv)
- {
- xmlCheckVersion(20000);
- return(0);
diff -r 64248cf9eb67 -r 6f157d4a35f4 math/R-XML/patches/patch-configure.in
--- a/math/R-XML/patches/patch-configure.in Sun Jul 07 13:38:23 2013 +0000
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,13 +0,0 @@
-$NetBSD: patch-configure.in,v 1.1 2013/06/13 14:27:50 joerg Exp $
-
---- configure.in.orig 2013-06-13 11:02:41.000000000 +0000
-+++ configure.in
-@@ -408,7 +408,7 @@ else # -z "${LIBXML2}"
- #include <libxml/parser.h>
- #endif
- int
--main(int argc, char *argv)
-+main(int argc, char **argv)
- {
- xmlCheckVersion(20000);
- return(0);
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