[pkgsrc/trunk]: pkgsrc/biology/primer3 Update 2.2.3 to 2.3.6

[mef <mef%pkgsrc.org@localhost>]

details:   https://anonhg.NetBSD.org/pkgsrc/rev/784e9659fbbe
branches:  trunk
changeset: 645617:784e9659fbbe
user:      mef <mef%pkgsrc.org@localhost>
date:      Sat Jan 31 06:18:42 2015 +0000

description:
Update 2.2.3 to 2.3.6
---------------------
ChangeLog unknown.

diffstat:

 biology/primer3/Makefile                                   |   8 +++++---
 biology/primer3/distinfo                                   |  10 +++++-----
 biology/primer3/patches/patch-src_primer3__boulder__main.c |  10 +++++-----
 3 files changed, 15 insertions(+), 13 deletions(-)

diffs (60 lines):

diff -r e48963e9c7a7 -r 784e9659fbbe biology/primer3/Makefile
--- a/biology/primer3/Makefile  Sat Jan 31 01:43:49 2015 +0000
+++ b/biology/primer3/Makefile  Sat Jan 31 06:18:42 2015 +0000
@@ -1,9 +1,10 @@
-# $NetBSD: Makefile,v 1.2 2012/09/11 20:32:13 asau Exp $
+# $NetBSD: Makefile,v 1.3 2015/01/31 06:18:42 mef Exp $
 #
 
-VERS=          2.2.3
+VERS=          2.3.6
 
-DISTNAME=      primer3-${VERS}
+DISTNAME=      primer3-src-${VERS}
+PKGNAME=       ${DISTNAME:S/-src//}
 CATEGORIES=    biology
 MASTER_SITES=  ${MASTER_SITE_SOURCEFORGE:=primer3/}
 
@@ -12,6 +13,7 @@
 COMMENT=       Design PCR primers
 LICENSE=       gnu-gpl-v2
 
+WRKSRC=                ${WRKDIR}/${PKGNAME}
 USE_LANGUAGES= c c++
 USE_TOOLS+=    gmake
 BUILD_DIRS=    src
diff -r e48963e9c7a7 -r 784e9659fbbe biology/primer3/distinfo
--- a/biology/primer3/distinfo  Sat Jan 31 01:43:49 2015 +0000
+++ b/biology/primer3/distinfo  Sat Jan 31 06:18:42 2015 +0000
@@ -1,6 +1,6 @@
-$NetBSD: distinfo,v 1.1.1.1 2011/10/31 21:25:57 brook Exp $
+$NetBSD: distinfo,v 1.2 2015/01/31 06:18:42 mef Exp $
 
-SHA1 (primer3-2.2.3.tar.gz) = 20c6a00455b86a5712c1e297930f2624fca45881
-RMD160 (primer3-2.2.3.tar.gz) = 040b41649f5bfc17214502b2ba5e98d1a5afd73f
-Size (primer3-2.2.3.tar.gz) = 2284282 bytes
-SHA1 (patch-src_primer3__boulder__main.c) = a9228eb3f8f1969a6bc332f828db2def7cf00005
+SHA1 (primer3-src-2.3.6.tar.gz) = 7dbd33a4e9c2a4fe06c74d6b83f8ff0f9ed1c49a
+RMD160 (primer3-src-2.3.6.tar.gz) = 1cd48d0677303efd5ca0ce76ac46c04fd5f29b9c
+Size (primer3-src-2.3.6.tar.gz) = 1667573 bytes
+SHA1 (patch-src_primer3__boulder__main.c) = b99c0aa87d4e6282200d72c502c9c938f6ea2b76
diff -r e48963e9c7a7 -r 784e9659fbbe biology/primer3/patches/patch-src_primer3__boulder__main.c
--- a/biology/primer3/patches/patch-src_primer3__boulder__main.c        Sat Jan 31 01:43:49 2015 +0000
+++ b/biology/primer3/patches/patch-src_primer3__boulder__main.c        Sat Jan 31 06:18:42 2015 +0000
@@ -1,11 +1,11 @@
-$NetBSD: patch-src_primer3__boulder__main.c,v 1.1.1.1 2011/10/31 21:25:57 brook Exp $
+$NetBSD: patch-src_primer3__boulder__main.c,v 1.2 2015/01/31 06:18:43 mef Exp $
 
 getopt_long_only is not very portable; use getopt_long instead.
 
---- src/primer3_boulder_main.c.orig    2010-07-08 17:58:25.000000000 +0000
-+++ src/primer3_boulder_main.c
-@@ -133,7 +133,7 @@ main(int argc, char *argv[]) 
-   
+--- src/primer3_boulder_main.c.orig    2013-10-21 16:49:57.000000000 +0900
++++ src/primer3_boulder_main.c 2015-01-31 15:12:56.000000000 +0900
+@@ -128,7 +128,7 @@ main(int argc, char *argv[])
+ 
    /* Read in the flags provided with the program call */
    opterr = 0;
 -  while ((opt = getopt_long_only(argc, argv, "", long_options, &option_index)) != -1) {