[pkgsrc/trunk]: pkgsrc/math/R-lmm Update R-lmm to 0.3.5

[markd <markd%pkgsrc.org@localhost>]

details:   https://anonhg.NetBSD.org/pkgsrc/rev/b43e19a84bd6
branches:  trunk
changeset: 548375:b43e19a84bd6
user:      markd <markd%pkgsrc.org@localhost>
date:      Tue Oct 14 06:38:21 2008 +0000

description:
Update R-lmm to 0.3.5

Changes unknown

diffstat:

 math/R-lmm/Makefile         |   9 ++++-----
 math/R-lmm/distinfo         |   9 +++++----
 math/R-lmm/patches/patch-aa |  13 +++++++++++++
 3 files changed, 22 insertions(+), 9 deletions(-)

diffs (56 lines):

diff -r d24c99e5a6bd -r b43e19a84bd6 math/R-lmm/Makefile
--- a/math/R-lmm/Makefile       Tue Oct 14 06:25:37 2008 +0000
+++ b/math/R-lmm/Makefile       Tue Oct 14 06:38:21 2008 +0000
@@ -1,17 +1,16 @@
-# $NetBSD: Makefile,v 1.5 2007/02/22 19:30:04 wiz Exp $
+# $NetBSD: Makefile,v 1.6 2008/10/14 06:38:21 markd Exp $
 #
 
-PKGREVISION=           1
 CATEGORIES=            math
 MASTER_SITES=          ${MASTER_SITE_R_CRAN:=contrib/}
 
 MAINTAINER=            mchittur%cs.nmsu.edu@localhost
-HOMEPAGE=              ${R_HOMEPAGE_BASE}/lmm.html
+HOMEPAGE=              ${R_HOMEPAGE_BASE}/lmm/
 COMMENT=               Improved procedures for linear mixed models with R
 
 R_PKGNAME=             lmm
-R_PKGVER=              0.3-2
-USE_LANGUAGES=         c fortran
+R_PKGVER=              0.3-5
+USE_LANGUAGES+=                c fortran
 
 .include "../../math/R/Makefile.extension"
 .include "../../mk/bsd.pkg.mk"
diff -r d24c99e5a6bd -r b43e19a84bd6 math/R-lmm/distinfo
--- a/math/R-lmm/distinfo       Tue Oct 14 06:25:37 2008 +0000
+++ b/math/R-lmm/distinfo       Tue Oct 14 06:38:21 2008 +0000
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.1.1.1 2005/11/04 08:15:42 rillig Exp $
+$NetBSD: distinfo,v 1.2 2008/10/14 06:38:21 markd Exp $
 
-SHA1 (R/lmm_0.3-2.tar.gz) = a33a23ed1d9ae2a66d66bed0cee40bf3d1956647
-RMD160 (R/lmm_0.3-2.tar.gz) = c22870556376f489211d0c3882542d5a64b8ba70
-Size (R/lmm_0.3-2.tar.gz) = 30977 bytes
+SHA1 (R/lmm_0.3-5.tar.gz) = 47576977719aba4e8c0cf3f9b13db4747cc9a4d9
+RMD160 (R/lmm_0.3-5.tar.gz) = de3d86ae4ba7716bae8c2e56980da23ca9cee1a9
+Size (R/lmm_0.3-5.tar.gz) = 214352 bytes
+SHA1 (patch-aa) = 3aec0141a51f95167d5fb27cabaaea84dfb6be48
diff -r d24c99e5a6bd -r b43e19a84bd6 math/R-lmm/patches/patch-aa
--- /dev/null   Thu Jan 01 00:00:00 1970 +0000
+++ b/math/R-lmm/patches/patch-aa       Tue Oct 14 06:38:21 2008 +0000
@@ -0,0 +1,13 @@
+$NetBSD: patch-aa,v 1.1 2008/10/14 06:38:22 markd Exp $
+
+--- src/lmm.f.orig     2008-10-14 19:30:49.000000000 +1300
++++ src/lmm.f
+@@ -549,7 +549,7 @@ C     3 = inadequate information to obta
+ C     4 = value of xi or inv(Ui) became non-pos.def. during iterations
+ C     5 = t(X)%*%W%*%X became non-pos.def. during iterations
+ C     6 = supplied xihat is non-pos.def.
+-      integer gmax/50/
++      integer gmax
+       double precision estarhat(0:50)
+       integer ntot,subj(ntot),m,ist(m),ifin(m),occ(ntot),nmax,
+      /     pcol,q,zcol(q),iflag,err,msg,iter,p,xcol(p),i,j,