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[pkgsrc/trunk]: pkgsrc/databases/mongodb mongodb4: updated to 4.2.3



details:   https://anonhg.NetBSD.org/pkgsrc/rev/09ac71476e4c
branches:  trunk
changeset: 422689:09ac71476e4c
user:      adam <adam%pkgsrc.org@localhost>
date:      Sat Feb 01 20:00:08 2020 +0000

description:
mongodb4: updated to 4.2.3

4.2.3:
Issues fixed:
SERVER-42565: Aggregations and find commands sort missing fields differently?
SERVER-44174: $push and $addToSet should restrict memory usage
SERVER-40435: A clearJumboFlag command to clear the jumbo flag
SERVER-45270: Increased vulnerability to slow DNS
TOOLS-1952: Use ?forceTableScan by default when running against WiredTiger nodes
TOOLS-2453: Index keys not escaped correctly
SERVER-45396: fix the ?me? field in isMaster responses when using splithorizon
SERVER-45309: Ensure bind credentials live longer than LDAP operations
WT-5120: Checkpoint hangs when reconciliation doesn?t release the eviction generation

4.2.2:
Issues fixed:
SERVER-31083: Allow passing primary shard to ?enableSharding? command for a new database
SERVER-33272: The DatabaseHolder::close() function no longer requires a global write lock and neither does the dropDatabase command
SERVER-44050: Arrays along ?hashed? index key path are not correctly rejected
SERVER-43882: Building indexes for startup recovery uses unowned RecordData after yielding its cursor
SERVER-44617: $regexFind crash when one of the capture group doesn?t match the input but pattern matches
SERVER-44721: Shell KMS AWS support cannot decrypt responses
WT-4961: Checkpoints with cache overflow must keep history for reads

4.2.1:
Issues fixed:
SERVER-37768: Platform Support: Add Community & Enterprise Debian 10 x64
SERVER-37772: Platform Support: Add Community & Enterprise RHEL 8 x64
SERVER-41506: Track metrics associated with a node calling an election
SERVER-41499: Track number of elections called for each reason in serverStatus
SERVER-42518: Wildcard index plans miss results when the query path has multiple subsequent array indexes
SERVER-42856: Transactions with write can be sent to the wrong shard

diffstat:

 databases/mongodb/Makefile                                                                                     |   27 +-
 databases/mongodb/PLIST                                                                                        |    5 +-
 databases/mongodb/distinfo                                                                                     |   32 +-
 databases/mongodb/options.mk                                                                                   |   21 +-
 databases/mongodb/patches/patch-SConstruct                                                                     |   50 +--
 databases/mongodb/patches/patch-site__scons_mongo_platform.py                                                  |   16 +-
 databases/mongodb/patches/patch-src_mongo_base_initializer.h                                                   |    8 +-
 databases/mongodb/patches/patch-src_mongo_db_matcher_expression__leaf.cpp                                      |   22 -
 databases/mongodb/patches/patch-src_mongo_db_query_collation_collator__interface__icu.h                        |   35 ++
 databases/mongodb/patches/patch-src_mongo_platform_random.cpp                                                  |   14 +-
 databases/mongodb/patches/patch-src_mongo_util_processinfo__netbsd.cpp                                         |   32 ++-
 databases/mongodb/patches/patch-src_mongo_util_time__support.cpp                                               |   10 +-
 databases/mongodb/patches/patch-src_third__party_IntelRDFPMathLib20U1_LIBRARY_float128_op__system.h            |  118 +++++----
 databases/mongodb/patches/patch-src_third__party_asio-master_asio_include_asio_detail_impl_kqueue__reactor.ipp |   17 +
 databases/mongodb/patches/patch-src_third__party_mozjs-60_platform_x86__64_netbsd_build_js-confdefs.h          |   21 +
 15 files changed, 246 insertions(+), 182 deletions(-)

diffs (truncated from 769 to 300 lines):

diff -r aa5f3bd1da9a -r 09ac71476e4c databases/mongodb/Makefile
--- a/databases/mongodb/Makefile        Sat Feb 01 19:56:54 2020 +0000
+++ b/databases/mongodb/Makefile        Sat Feb 01 20:00:08 2020 +0000
@@ -1,12 +1,11 @@
-# $NetBSD: Makefile,v 1.49 2020/01/18 21:48:56 jperkin Exp $
+# $NetBSD: Makefile,v 1.50 2020/02/01 20:00:08 adam Exp $
 
-DISTNAME=      mongodb-src-r4.0.6
+DISTNAME=      mongodb-src-r4.2.3
 PKGNAME=       ${DISTNAME:S/src-r//}
-PKGREVISION=   10
 CATEGORIES=    databases
 MASTER_SITES=  http://fastdl.mongodb.org/src/
 
-MAINTAINER=    pkgsrc-users%netbsd.org@localhost
+MAINTAINER=    pkgsrc-users%NetBSD.org@localhost
 HOMEPAGE=      https://www.mongodb.com/
 COMMENT=       NoSQL distributed document-oriented database
 LICENSE=       server-side-public-license # Client and tools licensed under apache-2.0
@@ -16,8 +15,8 @@
 
 EXTRACT_USING= bsdtar
 
-BUILD_DEPENDS+=        ${PYPKGPREFIX}-cheetah-[0-9]*:../../devel/py-cheetah
-BUILD_DEPENDS+=        ${PYPKGPREFIX}-typing-[0-9]*:../../devel/py-typing
+BUILD_DEPENDS+=        ${PYPKGPREFIX}-cheetah-[0-9]*:../../devel/py-cheetah3
+BUILD_DEPENDS+=        ${PYPKGPREFIX}-psutil-[0-9]*:../../sysutils/py-psutil
 BUILD_DEPENDS+=        ${PYPKGPREFIX}-regex-[0-9]*:../../textproc/py-regex
 BUILD_DEPENDS+=        ${PYPKGPREFIX}-yaml-[0-9]*:../../textproc/py-yaml
 
@@ -31,9 +30,10 @@
 USE_TOOLS+=    pkg-config
 
 SCONS_ARGS=    ${_MAKE_JOBS}
+SCONS_ARGS+=   --dbg=off # on: argument parsing problem
 SCONS_ARGS+=   --disable-warnings-as-errors
 SCONS_ARGS+=   --release
-SCONS_ARGS+=   --runtime-hardening=off # does not produce executables
+SCONS_ARGS+=   --runtime-hardening=off # on: does not produce executables
 #SCONS_ARGS+=  --use-system-asio
 SCONS_ARGS+=   --use-system-boost
 SCONS_ARGS+=   --use-system-icu
@@ -45,8 +45,9 @@
 #SCONS_ARGS+=  --use-system-wiredtiger
 SCONS_ARGS+=   --use-system-yaml
 SCONS_ARGS+=   --use-system-zlib
+SCONS_ARGS+=   --use-system-zstd
 
-PYTHON_VERSIONS_ACCEPTED=      27
+PYTHON_VERSIONS_INCOMPATIBLE=  27
 
 .include "../../mk/bsd.prefs.mk"
 
@@ -123,10 +124,10 @@
 # Copy system specific files for NetBSD and DragonFly
 post-extract:
        ${CHMOD} -R g-w ${WRKSRC}
-       ${CP} -R ${WRKSRC}/src/third_party/mozjs-45/platform/x86_64/freebsd \
-               ${WRKSRC}/src/third_party/mozjs-45/platform/x86_64/dragonfly
-       ${CP} -R ${WRKSRC}/src/third_party/mozjs-45/platform/x86_64/openbsd \
-               ${WRKSRC}/src/third_party/mozjs-45/platform/x86_64/netbsd
+       ${CP} -R ${WRKSRC}/src/third_party/mozjs-60/platform/x86_64/freebsd \
+               ${WRKSRC}/src/third_party/mozjs-60/platform/x86_64/dragonfly
+       ${CP} -R ${WRKSRC}/src/third_party/mozjs-60/platform/x86_64/freebsd \
+               ${WRKSRC}/src/third_party/mozjs-60/platform/x86_64/netbsd
        ${CP} ${WRKSRC}/src/mongo/db/ftdc/ftdc_system_stats_openbsd.cpp \
                ${WRKSRC}/src/mongo/db/ftdc/ftdc_system_stats_netbsd.cpp
        ${CP} ${WRKSRC}/src/mongo/db/ftdc/ftdc_system_stats_freebsd.cpp \
@@ -156,11 +157,11 @@
        --prefix=${DESTDIR}${PREFIX} install
 
 post-install:
-       ${INSTALL_DATA} ${WRKSRC}/README ${DESTDIR}${PREFIX}/share/doc/mongodb
        ${INSTALL_MAN} ${WRKSRC}/debian/*.1 ${DESTDIR}${PREFIX}/${PKGMANDIR}/man1
        ${INSTALL_DATA} ${WRKSRC}/debian/mongod.conf \
                ${DESTDIR}${PREFIX}/share/examples/mongodb
 
+.include "../../archivers/zstd/buildlink3.mk"
 .include "../../databases/mongo-c-driver/buildlink3.mk"
 .include "../../databases/sqlite3/buildlink3.mk"
 #.include "../../databases/wiredtiger/buildlink3.mk"
diff -r aa5f3bd1da9a -r 09ac71476e4c databases/mongodb/PLIST
--- a/databases/mongodb/PLIST   Sat Feb 01 19:56:54 2020 +0000
+++ b/databases/mongodb/PLIST   Sat Feb 01 20:00:08 2020 +0000
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.3 2019/03/05 19:35:58 adam Exp $
+@comment $NetBSD: PLIST,v 1.4 2020/02/01 20:00:08 adam Exp $
 bin/install_compass
 bin/mongo
 bin/mongod
@@ -10,9 +10,10 @@
 man/man1/mongoexport.1
 man/man1/mongofiles.1
 man/man1/mongoimport.1
+man/man1/mongoldap.1
+man/man1/mongoreplay.1
 man/man1/mongorestore.1
 man/man1/mongos.1
 man/man1/mongostat.1
 man/man1/mongotop.1
-share/doc/mongodb/README
 share/examples/mongodb/mongod.conf
diff -r aa5f3bd1da9a -r 09ac71476e4c databases/mongodb/distinfo
--- a/databases/mongodb/distinfo        Sat Feb 01 19:56:54 2020 +0000
+++ b/databases/mongodb/distinfo        Sat Feb 01 20:00:08 2020 +0000
@@ -1,25 +1,25 @@
-$NetBSD: distinfo,v 1.24 2019/03/05 19:35:58 adam Exp $
+$NetBSD: distinfo,v 1.25 2020/02/01 20:00:08 adam Exp $
 
-SHA1 (mongodb-src-r4.0.6.tar.gz) = 460caeb57bae951c0c019e0519c58695902d3f9c
-RMD160 (mongodb-src-r4.0.6.tar.gz) = 4bcb89f6e386699723119da71071a9bfb15742e9
-SHA512 (mongodb-src-r4.0.6.tar.gz) = 72e04154cf221833522bb0c2cc99acc2a86d20e2dcbf1f8c6ff0a870edf7b2529a55b6821c664805c00c12a311ae374a276ef1e3ccea1ed84fb125bb8726906a
-Size (mongodb-src-r4.0.6.tar.gz) = 49511958 bytes
-SHA1 (patch-SConstruct) = ec9987638b202ed8314667993c03414a1601563c
-SHA1 (patch-site__scons_mongo_platform.py) = ae62ec86206b9e20bd82c4b22621cab887390c72
+SHA1 (mongodb-src-r4.2.3.tar.gz) = 89c9f46a350d3149c2d9b486618f6c8fd62529e2
+RMD160 (mongodb-src-r4.2.3.tar.gz) = ce03973377b61285d973b2814680dda6520be2be
+SHA512 (mongodb-src-r4.2.3.tar.gz) = 60e9091cfab4a189a937dfa7ce232eb6ead2ca192c916579f4fb5da2040aa340ae9de0ea8c7a4ccb0edcfdbdf6e666144657f171c3f23c0a62bccf27cd351c69
+Size (mongodb-src-r4.2.3.tar.gz) = 61565615 bytes
+SHA1 (patch-SConstruct) = 027d8c9bd69256fe93ac40ae3e14e052ac367eb5
+SHA1 (patch-site__scons_mongo_platform.py) = 6a6daba04876f9779a26c579e6f6a66f55e1cbe6
 SHA1 (patch-site__scons_site__tools_libtool.py) = 2fb5947703f4292acc1306f92ca7938e8cbc62e0
-SHA1 (patch-src_mongo_base_initializer.h) = 675d655f4472f055a1d10144bbbebd75fbde6cb2
-SHA1 (patch-src_mongo_db_matcher_expression__leaf.cpp) = f95cd3fc88f1dfdf0d3aa5431d0c3407da020dfa
+SHA1 (patch-src_mongo_base_initializer.h) = efaec2e3b5b8a4bfb15c65c6952924cd1469bdc7
+SHA1 (patch-src_mongo_db_query_collation_collator__interface__icu.h) = f6382a3dcdbaed26fe692aa1ea43b2640168b253
 SHA1 (patch-src_mongo_db_repl_isself.c) = 82321c918b91ce1a68ce79c14589126aca6baf96
-SHA1 (patch-src_mongo_platform_random.cpp) = e6265dc33d1de7e9bfce63fa96aad67bb762e789
+SHA1 (patch-src_mongo_platform_random.cpp) = 0b42d1b8bf41f8a7448daca0b72bfed1ba462b99
 SHA1 (patch-src_mongo_platform_stack__locator__netbsd.cpp) = 0826e976048c79598ead6146f143ab3b4a2577fb
 SHA1 (patch-src_mongo_shell_linenoise__utf8.h) = a29cbf034716ce48a23192320caf4928282b6c1a
 SHA1 (patch-src_mongo_util_intrusive__counter.h) = 4c8e0d2e834686403a557de489ad518071851911
-SHA1 (patch-src_mongo_util_processinfo__netbsd.cpp) = fec6c7304f253204ccc03c11e93f6c430453c980
-SHA1 (patch-src_mongo_util_time__support.cpp) = 29dc7b0a0d278d2f92ae63882e87ce674d258ccf
-SHA1 (patch-src_third__party_IntelRDFPMathLib20U1_LIBRARY_float128_op__system.h) = 6cb2473f13ec3f8946959f3dfb94a70e95965703
+SHA1 (patch-src_mongo_util_processinfo__netbsd.cpp) = 9f3161c0693b3905299e0e022b9eb68d466d30c4
+SHA1 (patch-src_mongo_util_time__support.cpp) = d576d8d39b10c496e492c8f0faf7e81f09ca875c
+SHA1 (patch-src_third__party_IntelRDFPMathLib20U1_LIBRARY_float128_op__system.h) = 3c168389b9288df9055df0b01e8d26cf2f67293e
 SHA1 (patch-src_third__party_IntelRDFPMathLib20U1_LIBRARY_src_bid__functions.h) = aed897879501d74b19dd06a142ded0abf910898d
-SHA1 (patch-src_third__party_asio-master_asio_include_asio_detail_config.hpp) = c7464a56a2eb03fdb93f8ab90bf5732f6a0f9095
-SHA1 (patch-src_third__party_mozjs-38_platform_x86__64_netbsd_build_js-confdefs.h) = c2ad1041b5c1ff9fac9085d2a8963781f51873a8
-SHA1 (patch-src_third__party_mozjs-38_platform_x86__64_netbsd_include_js-config.h) = 7ddbb4e3bf4126a1be2195acc82ff859e8130a01
+SHA1 (patch-src_third__party_asio-master_asio_include_asio_detail_impl_kqueue__reactor.ipp) = 49a74ef12f20c4b243d328a2cd8317aa1a668b18
+SHA1 (patch-src_third__party_mozjs-60_platform_x86__64_netbsd_build_js-confdefs.h) = 2474fc221f0c59381c8529e986db1f3f67c405ec
 SHA1 (patch-src_third__party_s2_base_port.h) = 892ce91b5aaa432f34e1e7c169b7fd6eea2a3e94
 SHA1 (patch-src_third__party_wiredtiger_SConscript) = e97dea310463f246c0a8007a1ba9c5385105036d
+SHA1 (patch-src_third__party_wiredtiger_src_os__posix_os__fs.c) = 374deec76d92ee55587a9216b881bf1a1d35799a
diff -r aa5f3bd1da9a -r 09ac71476e4c databases/mongodb/options.mk
--- a/databases/mongodb/options.mk      Sat Feb 01 19:56:54 2020 +0000
+++ b/databases/mongodb/options.mk      Sat Feb 01 20:00:08 2020 +0000
@@ -1,23 +1,14 @@
-# $NetBSD: options.mk,v 1.4 2019/03/05 19:35:58 adam Exp $
+# $NetBSD: options.mk,v 1.5 2020/02/01 20:00:08 adam Exp $
 
 PKG_OPTIONS_VAR=       PKG_OPTIONS.mongodb
-PKG_SUPPORTED_OPTIONS= ssl wiredtiger
+PKG_SUPPORTED_OPTIONS= ssl
 
 .include "../../mk/bsd.options.mk"
 
 .if !empty(PKG_OPTIONS:Mssl)
 .include "../../security/openssl/buildlink3.mk"
-SCONS_ARGS+=           --ssl=openssl
+SCONS_ARGS+=           --ssl=on
+SCONS_ARGS+=           --ssl-provider=openssl
+.else
+SCONS_ARGS+=           --ssl=off
 .endif
-
-# The prospect of using databases/wiredtiger is unclear yet;
-# MongoDB doesn't provide guarantees for non-bundled WiredTiger:
-# https://groups.google.com/forum/#!msg/mongodb-dev/31FQSo4KVCI/Fx-WtJ9fzU4J
-.if !empty(PKG_OPTIONS:Mwiredtiger)
-.  if ${MACHINE_ARCH} == "x86_64"
-PKG_FAIL_REASON+=      "WiredTiger is not supported on 32-bit platforms"
-.  endif
-SCONS_ARGS+=           --wiredtiger=on
-.else
-SCONS_ARGS+=           --wiredtiger=off
-.endif
diff -r aa5f3bd1da9a -r 09ac71476e4c databases/mongodb/patches/patch-SConstruct
--- a/databases/mongodb/patches/patch-SConstruct        Sat Feb 01 19:56:54 2020 +0000
+++ b/databases/mongodb/patches/patch-SConstruct        Sat Feb 01 20:00:08 2020 +0000
@@ -1,4 +1,4 @@
-$NetBSD: patch-SConstruct,v 1.8 2019/03/05 19:35:58 adam Exp $
+$NetBSD: patch-SConstruct,v 1.9 2020/02/01 20:00:08 adam Exp $
 
 Add support for NetBSD and Dragonfly.
 Fix locations.
@@ -6,17 +6,17 @@
 Don't mess with the linker.
 Respect LDFLAGS and CXXFLAGS.
 
---- SConstruct.orig    2019-01-30 14:26:33.000000000 +0000
+--- SConstruct.orig    2019-12-04 23:29:59.000000000 +0000
 +++ SConstruct
-@@ -974,6 +974,7 @@ envDict = dict(BUILD_ROOT=buildDir,
+@@ -1015,6 +1015,7 @@ envDict = dict(BUILD_ROOT=buildDir,
                 INSTALL_DIR=installDir,
                 CONFIG_HEADER_DEFINES={},
                 LIBDEPS_TAG_EXPANSIONS=[],
-+               ENV = os.environ,
++               ENV=os.environ,
                 )
  
  env = Environment(variables=env_vars, **envDict)
-@@ -1110,7 +1111,9 @@ def CheckForProcessor(context, which_arc
+@@ -1169,7 +1170,9 @@ def CheckForProcessor(context, which_arc
  os_macros = {
      "windows": "defined(_WIN32)",
      "solaris": "defined(__sun)",
@@ -26,7 +26,7 @@
      "openbsd": "defined(__OpenBSD__)",
      "iOS": "defined(__APPLE__) && TARGET_OS_IOS && !TARGET_OS_SIMULATOR",
      "iOS-sim": "defined(__APPLE__) && TARGET_OS_IOS && TARGET_OS_SIMULATOR",
-@@ -1514,7 +1517,7 @@ if env['_LIBDEPS'] == '$_LIBDEPS_LIBS':
+@@ -1557,7 +1560,7 @@ if env['_LIBDEPS'] == '$_LIBDEPS_LIBS':
      if not env.TargetOSIs('solaris', 'darwin', 'windows', 'openbsd'):
          env.Tool('thin_archive')
  
@@ -35,31 +35,32 @@
      env['LINK_LIBGROUP_START'] = '-Wl,--start-group'
      env['LINK_LIBGROUP_END'] = '-Wl,--end-group'
      # NOTE: The leading and trailing spaces here are important. Do not remove them.
-@@ -1554,9 +1557,15 @@ elif env.TargetOSIs('freebsd'):
+@@ -1593,14 +1596,14 @@ if env.TargetOSIs('linux'):
+ elif env.TargetOSIs('solaris'):
+      env.Append( LIBS=["socket","resolv","lgrp"] )
+ 
+-elif env.TargetOSIs('freebsd'):
++elif env.TargetOSIs('freebsd', 'dragonfly'):
      env.Append( LIBS=[ "kvm" ] )
      env.Append( CCFLAGS=[ "-fno-omit-frame-pointer" ] )
  
-+elif env.TargetOSIs('dragonfly'):
-+    env.Append( LIBS=["m", "kvm"] )
-+
  elif env.TargetOSIs('darwin'):
-      env.Append( LIBS=["resolv"] )
+     env.Append( LIBS=["resolv"] )
  
-+elif env.TargetOSIs('netbsd'):
-+    env.Append( LIBS=["m", "kvm"] )
-+
- elif env.TargetOSIs('openbsd'):
+-elif env.TargetOSIs('openbsd'):
++elif env.TargetOSIs('netbsd', 'openbsd'):
      env.Append( LIBS=[ "kvm" ] )
  
-@@ -1777,7 +1786,6 @@ if env.TargetOSIs('posix'):
+ elif env.TargetOSIs('windows'):
+@@ -1858,7 +1861,6 @@ if env.TargetOSIs('posix'):
      # -Winvalid-pch Warn if a precompiled header (see Precompiled Headers) is found in the search path but can't be used.
      env.Append( CCFLAGS=["-fno-omit-frame-pointer",
                           "-fno-strict-aliasing",
--                         "-ggdb",
+-                         "-ggdb" if not env.TargetOSIs('emscripten') else "-g",
                           "-pthread",
                           "-Wall",
                           "-Wsign-compare",
-@@ -2413,9 +2421,9 @@ def doConfigure(myenv):
+@@ -2500,9 +2502,9 @@ def doConfigure(myenv):
      if usingLibStdCxx:
          def CheckModernLibStdCxx(context):
              test_body = """
@@ -72,7 +73,7 @@
              """
  
              context.Message('Checking for libstdc++ 5.3.0 or better... ')
-@@ -2649,7 +2657,7 @@ def doConfigure(myenv):
+@@ -2746,7 +2748,7 @@ def doConfigure(myenv):
          #
          myenv.Append( CCFLAGS=["/Zc:inline"])
  
@@ -81,7 +82,7 @@
          # This tells clang/gcc to use the gold linker if it is available - we prefer the gold linker
          # because it is much faster. Don't use it if the user has already configured another linker
          # selection manually.
-@@ -3202,7 +3210,7 @@ def doConfigure(myenv):
+@@ -3332,7 +3334,7 @@ def doConfigure(myenv):
          myenv.ConfError("Couldn't find SASL header/libraries")
  
      # requires ports devel/libexecinfo to be installed
@@ -90,12 +91,3 @@
          if not conf.CheckLib("execinfo"):
              myenv.ConfError("Cannot find libexecinfo, please install devel/libexecinfo.")
  
-@@ -3427,7 +3435,7 @@ def doConfigure(myenv):
- 
-         outputIndex = next((idx for idx in [0,1] if conf.CheckAltivecVbpermqOutput(idx)), None)
-         if outputIndex is not None:
--          conf.env.SetConfigHeaderDefine("MONGO_CONFIG_ALTIVEC_VEC_VBPERMQ_OUTPUT_INDEX", outputIndex)
-+            conf.env.SetConfigHeaderDefine("MONGO_CONFIG_ALTIVEC_VEC_VBPERMQ_OUTPUT_INDEX", outputIndex)
-         else:
-             myenv.ConfError("Running on ppc64le, but can't find a correct vec_vbpermq output index.  Compiler or platform not supported")
- 
diff -r aa5f3bd1da9a -r 09ac71476e4c databases/mongodb/patches/patch-site__scons_mongo_platform.py
--- a/databases/mongodb/patches/patch-site__scons_mongo_platform.py     Sat Feb 01 19:56:54 2020 +0000
+++ b/databases/mongodb/patches/patch-site__scons_mongo_platform.py     Sat Feb 01 20:00:08 2020 +0000
@@ -1,8 +1,8 @@



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