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[pkgsrc/trunk]: pkgsrc/biology/py-pydicom py-pydicom: Import py-pydicom-1.2.0...
details: https://anonhg.NetBSD.org/pkgsrc/rev/0bb5c36874d5
branches: trunk
changeset: 314583:0bb5c36874d5
user: leot <leot%pkgsrc.org@localhost>
date: Wed Oct 31 20:15:40 2018 +0000
description:
py-pydicom: Import py-pydicom-1.2.0 as biology/py-pydicom
Pydicom is a pure Python package for working with DICOM files such as medical
images, reports, and radiotherapy objects.
Pydicom makes it easy to read these complex files into natural pythonic
structures for easy manipulation. Modified datasets can be written again to
DICOM format files.
Packaged by Eric A. Borisch via NetBSD/pkgsrc#37, thank you Eric!
diffstat:
biology/py-pydicom/DESCR | 6 +
biology/py-pydicom/Makefile | 29 +++
biology/py-pydicom/PLIST | 424 ++++++++++++++++++++++++++++++++++++++++++++
biology/py-pydicom/distinfo | 6 +
4 files changed, 465 insertions(+), 0 deletions(-)
diffs (truncated from 481 to 300 lines):
diff -r 1ca95699ff96 -r 0bb5c36874d5 biology/py-pydicom/DESCR
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/biology/py-pydicom/DESCR Wed Oct 31 20:15:40 2018 +0000
@@ -0,0 +1,6 @@
+Pydicom is a pure Python package for working with DICOM files such as medical
+images, reports, and radiotherapy objects.
+
+Pydicom makes it easy to read these complex files into natural pythonic
+structures for easy manipulation. Modified datasets can be written again to
+DICOM format files.
diff -r 1ca95699ff96 -r 0bb5c36874d5 biology/py-pydicom/Makefile
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/biology/py-pydicom/Makefile Wed Oct 31 20:15:40 2018 +0000
@@ -0,0 +1,29 @@
+# $NetBSD: Makefile,v 1.1 2018/10/31 20:15:40 leot Exp $
+
+DISTNAME= pydicom-1.2.0
+PKGNAME= ${PYPKGPREFIX}-${DISTNAME}
+CATEGORIES= biology python
+MASTER_SITES= ${MASTER_SITE_GITHUB:=pydicom/}
+GITHUB_PROJECT= pydicom
+GITHUB_TAG= v${PKGVERSION_NOREV}
+
+MAINTAINER= eborisch%gmail.com@localhost
+HOMEPAGE= https://github.com/pydicom/pydicom/
+COMMENT= Pure python package for working with DICOM files
+LICENSE= modified-bsd AND mit
+
+USE_LANGUAGES= # none
+
+DOCDIR= share/doc/${PKGBASE}
+PLIST_SUBST+= DOCDIR=${DOCDIR:Q}
+INSTALLATION_DIRS+= ${DOCDIR}
+
+post-extract:
+ ${CHMOD} a-x ${WRKSRC}/pydicom/data/test_files/*.dcm
+
+post-install:
+ ${INSTALL_DATA} ${WRKSRC}/LICENSE ${DESTDIR}${PREFIX}/${DOCDIR}
+ ${INSTALL_DATA} ${WRKSRC}/README.md ${DESTDIR}${PREFIX}/${DOCDIR}
+
+.include "../../lang/python/egg.mk"
+.include "../../mk/bsd.pkg.mk"
diff -r 1ca95699ff96 -r 0bb5c36874d5 biology/py-pydicom/PLIST
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/biology/py-pydicom/PLIST Wed Oct 31 20:15:40 2018 +0000
@@ -0,0 +1,424 @@
+@comment $NetBSD: PLIST,v 1.1 2018/10/31 20:15:40 leot Exp $
+${PYSITELIB}/dicom.py
+${PYSITELIB}/dicom.pyc
+${PYSITELIB}/dicom.pyo
+${PYSITELIB}/${EGG_INFODIR}/PKG-INFO
+${PYSITELIB}/${EGG_INFODIR}/SOURCES.txt
+${PYSITELIB}/${EGG_INFODIR}/dependency_links.txt
+${PYSITELIB}/${EGG_INFODIR}/not-zip-safe
+${PYSITELIB}/${EGG_INFODIR}/top_level.txt
+${PYSITELIB}/pydicom/__init__.py
+${PYSITELIB}/pydicom/__init__.pyc
+${PYSITELIB}/pydicom/__init__.pyo
+${PYSITELIB}/pydicom/_dicom_dict.py
+${PYSITELIB}/pydicom/_dicom_dict.pyc
+${PYSITELIB}/pydicom/_dicom_dict.pyo
+${PYSITELIB}/pydicom/_private_dict.py
+${PYSITELIB}/pydicom/_private_dict.pyc
+${PYSITELIB}/pydicom/_private_dict.pyo
+${PYSITELIB}/pydicom/_storage_sopclass_uids.py
+${PYSITELIB}/pydicom/_storage_sopclass_uids.pyc
+${PYSITELIB}/pydicom/_storage_sopclass_uids.pyo
+${PYSITELIB}/pydicom/_uid_dict.py
+${PYSITELIB}/pydicom/_uid_dict.pyc
+${PYSITELIB}/pydicom/_uid_dict.pyo
+${PYSITELIB}/pydicom/_version.py
+${PYSITELIB}/pydicom/_version.pyc
+${PYSITELIB}/pydicom/_version.pyo
+${PYSITELIB}/pydicom/benchmarks/__init__.py
+${PYSITELIB}/pydicom/benchmarks/__init__.pyc
+${PYSITELIB}/pydicom/benchmarks/__init__.pyo
+${PYSITELIB}/pydicom/benchmarks/bench_encaps.py
+${PYSITELIB}/pydicom/benchmarks/bench_encaps.pyc
+${PYSITELIB}/pydicom/benchmarks/bench_encaps.pyo
+${PYSITELIB}/pydicom/benchmarks/bench_handler_numpy.py
+${PYSITELIB}/pydicom/benchmarks/bench_handler_numpy.pyc
+${PYSITELIB}/pydicom/benchmarks/bench_handler_numpy.pyo
+${PYSITELIB}/pydicom/benchmarks/bench_handler_rle.py
+${PYSITELIB}/pydicom/benchmarks/bench_handler_rle.pyc
+${PYSITELIB}/pydicom/benchmarks/bench_handler_rle.pyo
+${PYSITELIB}/pydicom/charset.py
+${PYSITELIB}/pydicom/charset.pyc
+${PYSITELIB}/pydicom/charset.pyo
+${PYSITELIB}/pydicom/compat.py
+${PYSITELIB}/pydicom/compat.pyc
+${PYSITELIB}/pydicom/compat.pyo
+${PYSITELIB}/pydicom/config.py
+${PYSITELIB}/pydicom/config.pyc
+${PYSITELIB}/pydicom/config.pyo
+${PYSITELIB}/pydicom/data/__init__.py
+${PYSITELIB}/pydicom/data/__init__.pyc
+${PYSITELIB}/pydicom/data/__init__.pyo
+${PYSITELIB}/pydicom/data/charset_files/FileInfo.txt
+${PYSITELIB}/pydicom/data/charset_files/__init__.py
+${PYSITELIB}/pydicom/data/charset_files/__init__.pyc
+${PYSITELIB}/pydicom/data/charset_files/__init__.pyo
+${PYSITELIB}/pydicom/data/charset_files/charlist.py
+${PYSITELIB}/pydicom/data/charset_files/charlist.pyc
+${PYSITELIB}/pydicom/data/charset_files/charlist.pyo
+${PYSITELIB}/pydicom/data/charset_files/chrArab.dcm
+${PYSITELIB}/pydicom/data/charset_files/chrFren.dcm
+${PYSITELIB}/pydicom/data/charset_files/chrFrenMulti.dcm
+${PYSITELIB}/pydicom/data/charset_files/chrGerm.dcm
+${PYSITELIB}/pydicom/data/charset_files/chrGreek.dcm
+${PYSITELIB}/pydicom/data/charset_files/chrH31.dcm
+${PYSITELIB}/pydicom/data/charset_files/chrH32.dcm
+${PYSITELIB}/pydicom/data/charset_files/chrHbrw.dcm
+${PYSITELIB}/pydicom/data/charset_files/chrI2.dcm
+${PYSITELIB}/pydicom/data/charset_files/chrJapMulti.dcm
+${PYSITELIB}/pydicom/data/charset_files/chrJapMultiExplicitIR6.dcm
+${PYSITELIB}/pydicom/data/charset_files/chrKoreanMulti.dcm
+${PYSITELIB}/pydicom/data/charset_files/chrRuss.dcm
+${PYSITELIB}/pydicom/data/charset_files/chrSQEncoding.dcm
+${PYSITELIB}/pydicom/data/charset_files/chrSQEncoding1.dcm
+${PYSITELIB}/pydicom/data/charset_files/chrX1.dcm
+${PYSITELIB}/pydicom/data/charset_files/chrX2.dcm
+${PYSITELIB}/pydicom/data/data_manager.py
+${PYSITELIB}/pydicom/data/data_manager.pyc
+${PYSITELIB}/pydicom/data/data_manager.pyo
+${PYSITELIB}/pydicom/data/test_files/CT_small.dcm
+${PYSITELIB}/pydicom/data/test_files/ExplVR_BigEnd.dcm
+${PYSITELIB}/pydicom/data/test_files/ExplVR_BigEndNoMeta.dcm
+${PYSITELIB}/pydicom/data/test_files/ExplVR_LitEndNoMeta.dcm
+${PYSITELIB}/pydicom/data/test_files/JPEG-LL.dcm
+${PYSITELIB}/pydicom/data/test_files/JPEG-lossy.dcm
+${PYSITELIB}/pydicom/data/test_files/JPEG2000.dcm
+${PYSITELIB}/pydicom/data/test_files/MR_small.dcm
+${PYSITELIB}/pydicom/data/test_files/MR_small_RLE.dcm
+${PYSITELIB}/pydicom/data/test_files/MR_small_bigendian.dcm
+${PYSITELIB}/pydicom/data/test_files/MR_small_expb.dcm
+${PYSITELIB}/pydicom/data/test_files/MR_small_implicit.dcm
+${PYSITELIB}/pydicom/data/test_files/MR_small_jp2klossless.dcm
+${PYSITELIB}/pydicom/data/test_files/MR_small_jpeg_ls_lossless.dcm
+${PYSITELIB}/pydicom/data/test_files/MR_truncated.dcm
+${PYSITELIB}/pydicom/data/test_files/OBXXXX1A.dcm
+${PYSITELIB}/pydicom/data/test_files/OBXXXX1A_2frame.dcm
+${PYSITELIB}/pydicom/data/test_files/OBXXXX1A_expb.dcm
+${PYSITELIB}/pydicom/data/test_files/OBXXXX1A_expb_2frame.dcm
+${PYSITELIB}/pydicom/data/test_files/OBXXXX1A_rle.dcm
+${PYSITELIB}/pydicom/data/test_files/OBXXXX1A_rle_2frame.dcm
+${PYSITELIB}/pydicom/data/test_files/OT-PAL-8-face.dcm
+${PYSITELIB}/pydicom/data/test_files/README.txt
+${PYSITELIB}/pydicom/data/test_files/SC_rgb.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_16bit.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_16bit_2frame.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_2frame.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_32bit.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_32bit_2frame.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_dcmtk_+eb+cr.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_dcmtk_+eb+cy+n1.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_dcmtk_+eb+cy+n2.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_dcmtk_+eb+cy+np.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_dcmtk_+eb+cy+s2.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_dcmtk_+eb+cy+s4.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_dcmtk_ebcr_dcmd.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_dcmtk_ebcyn1_dcmd.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_dcmtk_ebcyn2_dcmd.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_dcmtk_ebcynp_dcmd.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_dcmtk_ebcys2_dcmd.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_dcmtk_ebcys4_dcmd.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_expb.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_expb_16bit.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_expb_16bit_2frame.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_expb_2frame.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_expb_32bit.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_expb_32bit_2frame.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_gdcm2k_uncompressed.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_gdcm_KY.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_jpeg_dcmtk.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_jpeg_gdcm.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_jpeg_lossy_gdcm.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_rle.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_rle_16bit.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_rle_16bit_2frame.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_rle_2frame.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_rle_32bit.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_rle_32bit_2frame.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_small_odd.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_small_odd_jpeg.dcm
+${PYSITELIB}/pydicom/data/test_files/__init__.py
+${PYSITELIB}/pydicom/data/test_files/__init__.pyc
+${PYSITELIB}/pydicom/data/test_files/__init__.pyo
+${PYSITELIB}/pydicom/data/test_files/badVR.dcm
+${PYSITELIB}/pydicom/data/test_files/color-pl.dcm
+${PYSITELIB}/pydicom/data/test_files/color-px.dcm
+${PYSITELIB}/pydicom/data/test_files/color3d_jpeg_baseline.dcm
+${PYSITELIB}/pydicom/data/test_files/dicomdirtests/77654033/CR1/6154
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+${PYSITELIB}/pydicom/data/test_files/dicomdirtests/98892001/CT2N/6293
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+${PYSITELIB}/pydicom/data/test_files/dicomdirtests/98892003/MR700/4678
+${PYSITELIB}/pydicom/data/test_files/dicomdirtests/DICOMDIR
+${PYSITELIB}/pydicom/data/test_files/emri_small.dcm
+${PYSITELIB}/pydicom/data/test_files/emri_small_RLE.dcm
+${PYSITELIB}/pydicom/data/test_files/emri_small_big_endian.dcm
+${PYSITELIB}/pydicom/data/test_files/emri_small_jpeg_2k_lossless.dcm
+${PYSITELIB}/pydicom/data/test_files/emri_small_jpeg_ls_lossless.dcm
+${PYSITELIB}/pydicom/data/test_files/image_dfl.dcm
+${PYSITELIB}/pydicom/data/test_files/liver.dcm
+${PYSITELIB}/pydicom/data/test_files/liver_1frame.dcm
+${PYSITELIB}/pydicom/data/test_files/liver_expb.dcm
+${PYSITELIB}/pydicom/data/test_files/liver_expb_1frame.dcm
+${PYSITELIB}/pydicom/data/test_files/meta_missing_tsyntax.dcm
+${PYSITELIB}/pydicom/data/test_files/nested_priv_SQ.dcm
+${PYSITELIB}/pydicom/data/test_files/no_meta_group_length.dcm
+${PYSITELIB}/pydicom/data/test_files/priv_SQ.dcm
+${PYSITELIB}/pydicom/data/test_files/reportsi.dcm
+${PYSITELIB}/pydicom/data/test_files/reportsi_with_empty_number_tags.dcm
+${PYSITELIB}/pydicom/data/test_files/rtdose.dcm
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+${PYSITELIB}/pydicom/data/test_files/rtdose_rle.dcm
+${PYSITELIB}/pydicom/data/test_files/rtdose_rle_1frame.dcm
+${PYSITELIB}/pydicom/data/test_files/rtplan.dcm
+${PYSITELIB}/pydicom/data/test_files/rtplan.dump
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+${PYSITELIB}/pydicom/data/test_files/rtstruct.dcm
+${PYSITELIB}/pydicom/data/test_files/rtstruct.dump
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+${PYSITELIB}/pydicom/data/test_files/test.py
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+${PYSITELIB}/pydicom/data/test_files/test.pyo
+${PYSITELIB}/pydicom/data/test_files/zipMR.gz
+${PYSITELIB}/pydicom/data/tests/__init__.py
+${PYSITELIB}/pydicom/data/tests/__init__.pyc
+${PYSITELIB}/pydicom/data/tests/__init__.pyo
+${PYSITELIB}/pydicom/data/tests/test_data_manager.py
+${PYSITELIB}/pydicom/data/tests/test_data_manager.pyc
+${PYSITELIB}/pydicom/data/tests/test_data_manager.pyo
+${PYSITELIB}/pydicom/datadict.py
+${PYSITELIB}/pydicom/datadict.pyc
+${PYSITELIB}/pydicom/datadict.pyo
+${PYSITELIB}/pydicom/dataelem.py
+${PYSITELIB}/pydicom/dataelem.pyc
+${PYSITELIB}/pydicom/dataelem.pyo
+${PYSITELIB}/pydicom/dataset.py
+${PYSITELIB}/pydicom/dataset.pyc
+${PYSITELIB}/pydicom/dataset.pyo
+${PYSITELIB}/pydicom/dicomdir.py
+${PYSITELIB}/pydicom/dicomdir.pyc
+${PYSITELIB}/pydicom/dicomdir.pyo
+${PYSITELIB}/pydicom/dicomio.py
+${PYSITELIB}/pydicom/dicomio.pyc
+${PYSITELIB}/pydicom/dicomio.pyo
+${PYSITELIB}/pydicom/encaps.py
+${PYSITELIB}/pydicom/encaps.pyc
+${PYSITELIB}/pydicom/encaps.pyo
+${PYSITELIB}/pydicom/errors.py
+${PYSITELIB}/pydicom/errors.pyc
+${PYSITELIB}/pydicom/errors.pyo
+${PYSITELIB}/pydicom/filebase.py
+${PYSITELIB}/pydicom/filebase.pyc
+${PYSITELIB}/pydicom/filebase.pyo
+${PYSITELIB}/pydicom/filereader.py
+${PYSITELIB}/pydicom/filereader.pyc
+${PYSITELIB}/pydicom/filereader.pyo
+${PYSITELIB}/pydicom/fileutil.py
+${PYSITELIB}/pydicom/fileutil.pyc
+${PYSITELIB}/pydicom/fileutil.pyo
+${PYSITELIB}/pydicom/filewriter.py
+${PYSITELIB}/pydicom/filewriter.pyc
+${PYSITELIB}/pydicom/filewriter.pyo
+${PYSITELIB}/pydicom/misc.py
+${PYSITELIB}/pydicom/misc.pyc
+${PYSITELIB}/pydicom/misc.pyo
+${PYSITELIB}/pydicom/multival.py
+${PYSITELIB}/pydicom/multival.pyc
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