This appears to be a PLIST issue. Since the branch, libxml2 has been updated several times, but no single commit without a version bump has addressed the PLIST issue. Since the current version of libxml2 installs fine (ie PLIST for newer versions are not broken), can't we just request a pullup to the latest version on the head?
I've a pullup request pending which fixes the PLIST problem (Ticket #100, IIRC). It hasn't pullup up, because of a problem wrt Solaris.
Cheers, Marc
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