>Number:         28503
>Category:       pkg
>Synopsis:       biology/mummer is out of date
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    pkg-manager
>State:          open
>Class:          change-request
>Submitter-Id:   net
>Arrival-Date:   Wed Dec 01 21:03:00 +0000 2004
>Originator:     David Price
>Release:        1.6.1
>Organization:
NMSU
>Environment:
NetBSD stachys.nmsu.edu 1.6.1 NetBSD 1.6.1 (BRIN_LAPTOP) #0: Mon Jun 16 17:13:59 MDT 2003     root@viola.nmsu.edu:/usr/src-1.6.1/sys/arch/i386/compile/BRIN_LAPTOP i386
>Description:
The biology/mummer package is out of date, and we received a request to update it. 
>How-To-Repeat:

>Fix:
The following patch should bring it up to date:


diff -bur mummer.orig/Makefile mummer/Makefile
--- mummer.orig/Makefile        Tue Nov 30 14:47:27 2004
+++ mummer/Makefile     Tue Nov 30 16:01:14 2004
@@ -1,8 +1,8 @@
 # $NetBSD: Makefile,v 1.3 2004/04/11 04:07:05 snj Exp $
 #

-DISTNAME=              MUMmer3.04
-PKGNAME=               mummer-3.04
+DISTNAME=              MUMmer3.15
+PKGNAME=               mummer-3.15
 CATEGORIES=            biology
 MASTER_SITES=          ftp://ftp.tigr.org/pub/software/MUMmer/

@@ -37,7 +37,7 @@
                ${PREFIX}/share/doc/html/mummer
 .endfor
        ${INSTALL_DATA_DIR} ${PREFIX}/share/doc/mummer
-.for DOC in maxmat3man.pdf maxmat3man.tex maxmat3src.pdf nucmer.README    \
+.for DOC in maxmat3man.tex maxmat3src.pdf nucmer.README    \
        optionman.sty promer.README run-mummer1.README run-mummer3.README \
        skaff.sty
        ${INSTALL_DATA} ${WRKSRC}/docs/${DOC} ${PREFIX}/share/doc/mummer
diff -bur mummer.orig/PLIST mummer/PLIST
--- mummer.orig/PLIST   Tue Nov 30 14:47:27 2004
+++ mummer/PLIST        Tue Nov 30 16:33:59 2004
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.1.1.1 2003/09/27 22:24:57 jschauma Exp $
+@comment $NetBSD$
 bin/annotate
 bin/combineMUMs
 bin/gaps
@@ -23,7 +23,6 @@
 share/doc/html/mummer/nucex.gif
 share/doc/html/mummer/osi.gif
 share/doc/html/mummer/pro_proex.gif
-share/doc/mummer/maxmat3man.pdf
 share/doc/mummer/maxmat3man.tex
 share/doc/mummer/maxmat3src.pdf
 share/doc/mummer/nucmer.README
diff -bur mummer.orig/distinfo mummer/distinfo
--- mummer.orig/distinfo        Tue Nov 30 14:47:27 2004
+++ mummer/distinfo     Tue Nov 30 15:19:45 2004
@@ -1,5 +1,5 @@
 $NetBSD: distinfo,v 1.1.1.1 2003/09/27 22:24:57 jschauma Exp $

-SHA1 (MUMmer3.04.tar.gz) = e0f17d535a857bd9b3059d5d0a951621f89041b2
-Size (MUMmer3.04.tar.gz) = 835629 bytes
-SHA1 (patch-aa) = 39253c79e7239365dfdcee46c410f234a23c6df0
+SHA1 (MUMmer3.15.tar.gz) = c8907b0b2010e3a8d07fff0dde570c12d9cf8dea
+Size (MUMmer3.15.tar.gz) = 660102 bytes
+SHA1 (patch-aa) = 93bfa77a8b766052f095b56d4c40105ae57ba804
diff -bur mummer.orig/patches/patch-aa mummer/patches/patch-aa
--- mummer.orig/patches/patch-aa        Tue Nov 30 14:47:27 2004
+++ mummer/patches/patch-aa     Tue Nov 30 14:28:14 2004
@@ -1,14 +1,12 @@
-$NetBSD: patch-aa,v 1.1.1.1 2003/09/27 22:24:57 jschauma Exp $
-
---- Makefile.orig      2003-07-09 09:49:51.000000000 -0400
-+++ Makefile   2003-09-27 18:15:34.000000000 -0400
+--- Makefile.orig      Tue Nov 30 14:22:43 2004
++++ Makefile   Tue Nov 30 14:25:54 2004
 @@ -22,7 +22,7 @@
  #  'make uninstall' alias for 'make clean' (for compatibility)
  #
  #-------------------------------------------------------------------------------
 -SHELL = /bin/sh
 +SHELL = ${SH}
- VERSION := 3.04
+ VERSION := 3.15


 @@ -35,15 +35,12 @@
@@ -30,5 +28,5 @@
 +#PERL := $(filter /%,$(shell /bin/sh -c 'type perl'))
 +#AR   := $(filter /%,$(shell /bin/sh -c 'type ar'))

- FLATS = ACKNOWLEDGEMENTS COPYRIGHT INSTALL LICENSE Makefile README
+ FLATS = ACKNOWLEDGEMENTS COPYRIGHT INSTALL LICENSE Makefile README ChangeLog