On Sun, Jul 06, 2003 at 06:24:22PM -0400, Sean Davis wrote:
  | Hi, I have noticed two problems that just started recently in -current:
  | 
  | 1) samba and apache, though their scripts are still in /etc/rc.d and rcorder
  |    still finds them in the same place it always did, are totally ignored by the
  |    bootup and shutdown process. I have to run /etc/rc.d/apache start and
  |    /etc/rc.d/samba start manually every time. When shutting down the system,
  |    they don't get shutdown the right way either, just killed along with
  |    everything else. (as on no 'Stopping apache...' on shutdown).

Try updating /etc/rc.subr to 1.59; 1.58 had some problems.
(If your scripts use the pkgsrc equivalent of rc.subr, update that too.)